View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_high_127 (Length: 262)
Name: NF2519_high_127
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_127 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 9380852 - 9381100
Alignment:
| Q |
14 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9380852 |
atgaatgcaaaaagttaccatggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
9380951 |
T |
|
| Q |
114 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9380952 |
aaaagccttagaattcttaaaagatgttccatacttagcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
9381051 |
T |
|
| Q |
214 |
gccacagccacacttcttgttccacttatgtatcacatagccataaata |
262 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9381052 |
gccacagccacacttcttgttccacttttgtatcacatagccataaata |
9381100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 55738865 - 55739105
Alignment:
| Q |
14 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
113 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||| | || |||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| | || |
|
|
| T |
55738865 |
atgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttc |
55738964 |
T |
|
| Q |
114 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
213 |
Q |
| |
|
||||| ||||| |||||| |||||| ||||| |||||||||| |||||| |||||||| || |||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
55738965 |
taaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataagtagtattattactgaattcatcacttctaatgat |
55739064 |
T |
|
| Q |
214 |
gccacagccacacttcttgttccacttatgtatcacatagc |
254 |
Q |
| |
|
||||| || |||||| || |||||||| | ||||| ||||| |
|
|
| T |
55739065 |
gccactgctacacttattattccacttctatatcatatagc |
55739105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University