View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_13 (Length: 535)
Name: NF2519_high_13
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 521
Target Start/End: Complemental strand, 49979186 - 49978671
Alignment:
| Q |
20 |
gtgaatgatctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagcacctta |
119 |
Q |
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| T |
49979186 |
gtgaatgagctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagcacctta |
49979087 |
T |
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| Q |
120 |
attaattatgaatcatctatctctctctct--------------ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatc |
205 |
Q |
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| T |
49979086 |
attaattatgaatcatctatctctctctctctctctctctctctggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatc |
49978987 |
T |
|
| Q |
206 |
actccattacataccatcttgaaatcgattgatcgttgaaggatgatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactca |
305 |
Q |
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| T |
49978986 |
actccattacataccatcttgaaatcgattgatcgttgaaggatgatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactca |
49978887 |
T |
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| Q |
306 |
cctccacctgccacatattgctgcccattgttactcatcatatgactcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttg |
405 |
Q |
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| T |
49978886 |
cctccacctgccacatattgctgcccattgttactcatcatatgactcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttg |
49978787 |
T |
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| Q |
406 |
atggtgaagagtacagatattgttgaacttgagatgttgaggatgatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatg |
505 |
Q |
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| T |
49978786 |
atggtgaagagtacagatattgttgaacttgagatgttgaggatgatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatg |
49978687 |
T |
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| Q |
506 |
atgatgatctcctatg |
521 |
Q |
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| T |
49978686 |
atgatgatctcctatg |
49978671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
260 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
316 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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