View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_135 (Length: 255)
Name: NF2519_high_135
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_135 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 47728636 - 47728883
Alignment:
| Q |
1 |
tcactacaataattagtatttgattgaagtatatattagcaatatttttaaa----------tggttaaacaaatttaatgcagagttatagacactaga |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47728636 |
tcactacaataattagtatttgattgaagtatatattagcaatatttttaaaatgtacatgatggttaaacaaatttaatgcagagttatagacactaga |
47728735 |
T |
|
| Q |
91 |
cattgcatacatgcatattatggaaaaacaataataaacctcagcatgttgaagttcctagtaattaatcaaatgaa--gtgagaagaaaattacccagt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47728736 |
cattgcatacatgcatattatggaaaaacaataataaacctcagcatgtttaagttcctagtaattaatcaaatgaagtgtgagaagaaaattacccagt |
47728835 |
T |
|
| Q |
189 |
catgacaagagaggagaaaatggtcagcaccattgcttctattccaat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47728836 |
catgacaagagaggagaaaatggtcagcaccattgcttctattccaat |
47728883 |
T |
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