View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_high_150 (Length: 247)
Name: NF2519_high_150
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_150 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 5984898 - 5985127
Alignment:
| Q |
18 |
cctcttttaaccttctgtttgttgcaacaagagtgatgtcccatgatgtcttgttttggtattatttgaaaaatggtgaaagaaatgacagatgaatctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5984898 |
cctcttttaaccttctgtttgttgcaacaagagtgatgtcccatgatgtcttgttttggtattatttgaaaaatggtgaaagaaatgacagatgaatctc |
5984997 |
T |
|
| Q |
118 |
tatcttctatctttggctttagcttaagaatagaatatgttgcattaaattatgaaaagaatggtgtgatcagatcgagtaacagagaagaggatgatat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5984998 |
tatcttctatctttggctttagcttaagaatagaatatgttgcattaaattatgaaaagaatggtgtgatcagatcgagtaacagagaaaaggatgatat |
5985097 |
T |
|
| Q |
218 |
atatgcagaaactgtgagtgcactgaggtg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5985098 |
atatgcagaaactgtgagtgcactgaggtg |
5985127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 5949370 - 5949539
Alignment:
| Q |
18 |
cctcttttaaccttctgtttgttgcaacaagagtgatgtcccatgatgtcttgttttggtattatttgaaaaatggtgaaagaaatgacagatgaatctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949370 |
cctcttttaaccttctgtttgttgcaacaagagtgatgtcccatgatgtcttgttttggtattatttgaaaaatggtgaaagaaatgacagatgaatcta |
5949469 |
T |
|
| Q |
118 |
t---atcttctatctttggctttagcttaagaatagaatatgttgcattaaattatgaaaagaatggtgt |
184 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
5949470 |
tatgatcttctatctttggctttagcttaagaatagaatatgttgcattaaattaagaaaagaacggtgt |
5949539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 5921478 - 5921709
Alignment:
| Q |
18 |
cctcttttaaccttctgtttgttgcaacaagagtgatgtcccatgatgtcttgttt----tggtattatttgaaaaat--ggtgaaagaaatgacagatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| | || || |||||||||||||||||||| |
|
|
| T |
5921478 |
cctcttttaaccttctgtttgttgcaacaagagtgatgtcccatgatgtctagtttcttttggtgttatgttaataaacgggtgaaagaaatgacagatg |
5921577 |
T |
|
| Q |
112 |
aatctctatcttctatctttggctttagcttaagaatagaatatgttgcattaaattatgaaaagaatggtgtgatcagatcgagtaacagagaagagga |
211 |
Q |
| |
|
|| || |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
5921578 |
aagctatatcttctatctttggctttagtttaagaatagaatatattgcattaaattatgaaaagaatggtgtgatca----gagcaacagagaaaagga |
5921673 |
T |
|
| Q |
212 |
tgatatatatgcagaaactgtgagtgcactgaggtg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921674 |
tgatatatatgcagaaactgtgagtgcactgaggtg |
5921709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 5960789 - 5960944
Alignment:
| Q |
95 |
gaaagaaatgacagatgaatctctatcttctatctttggctttagcttaagaatagaatatgttgcattaaattatgaaaagaatggtgtgatcagatcg |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
5960789 |
gaaagaaatgacagatgaagctctatcttctatctttggctttagtttaagaatagaacatgttgcattaaattgtgaaaagaatggtgtgatca----g |
5960884 |
T |
|
| Q |
195 |
agtaacagagaagaggat-------gatatatatgcagaaactgtgagtgcactgaggtg |
247 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
5960885 |
agtaacagagaaaaggatatatatatatatatatgcacaaactgtgagtgcactgaggtg |
5960944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 5843531 - 5843602
Alignment:
| Q |
110 |
tgaatctctatcttctatctttggctttagcttaagaatagaatatgttgcattaaattatgaaaagaatgg |
181 |
Q |
| |
|
|||| |||||| || |||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
5843531 |
tgaaactctatattatatctttggctttagctttagaatagaacaggttgcattaaattatgaaatgaatgg |
5843602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 5850273 - 5850344
Alignment:
| Q |
110 |
tgaatctctatcttctatctttggctttagcttaagaatagaatatgttgcattaaattatgaaaagaatgg |
181 |
Q |
| |
|
|||| |||||| || |||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
5850273 |
tgaaactctatattatatctttggctttagctttagaatagaacaggttgcattaaattatgaaatgaatgg |
5850344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 5960636 - 5960691
Alignment:
| Q |
18 |
cctcttttaaccttctgtttgttgcaacaagagtgatgtcccatgatgtcttgttt |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
5960636 |
cctcttttaaccttctgtttgttgcaacaagaatgatgtctcatgatgtctagttt |
5960691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 5887685 - 5887735
Alignment:
| Q |
136 |
ttagcttaagaatagaatatgttgcattaaattatgaaaagaatggtgtga |
186 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| |||||| |||| |
|
|
| T |
5887685 |
ttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtga |
5887735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University