View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_154 (Length: 244)
Name: NF2519_high_154
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_154 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5573899 - 5574103
Alignment:
| Q |
1 |
atttcttcatattgaagcaataaactaaaacataaaattata---taaactaagaaactcgccttagtcaaattaagggtgccacaactattccttag-- |
95 |
Q |
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| T |
5573899 |
atttcttcatattgaagcaataaactaaaacataaaattatactataaactaagaaactcgccttagtcaaattaagggtgccacaactattccttagcg |
5573998 |
T |
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| Q |
96 |
----cgagcaataatatattcaccacaaactcaaagcttcttgaaatgttcttaagaagatggaaagagtttgaaaaaactatatactaactacttcata |
191 |
Q |
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| T |
5573999 |
ttagcgagcaataatatattcaccacaaactcaaagcttcttgaaatgttcttaagaagatggaaagagtttgaaaaaactatatactaactacttcata |
5574098 |
T |
|
| Q |
192 |
tatat |
196 |
Q |
| |
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||||| |
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| T |
5574099 |
tatat |
5574103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 5583121 - 5583242
Alignment:
| Q |
1 |
atttcttcatattgaagcaataaactaaaacataaaattatataaactaagaaactcgccttagtcaaattaagggtgccacaactattccttagcgagc |
100 |
Q |
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||||||||| |||||| ||||| |||| ||||||||| ||||||||||||| || |||| ||||||||||||||||||||| ||||| |||| || |
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| T |
5583121 |
atttcttcaaattgaattaataacttaaatcataaaatttgataaactaagaaaatcacctttgtcaaattaagggtgccacaa--attccgtagcaagt |
5583218 |
T |
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| Q |
101 |
aataatatattcaccacaaactca |
124 |
Q |
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||||||||| ||||| |||||||| |
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| T |
5583219 |
aataatataatcacctcaaactca |
5583242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 5574254 - 5574293
Alignment:
| Q |
190 |
tatatatcttaagaaagaaacgttatcaacatgttgaaat |
229 |
Q |
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| T |
5574254 |
tatatatcttaagaaagacacgttatcaacatgttgaaat |
5574293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 5577257 - 5577316
Alignment:
| Q |
126 |
agcttcttgaaatgttc-ttaagaagatggaaagagtttgaaaaaact-atatactaact |
183 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||| ||| ||| ||||||||||| |
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| T |
5577257 |
agcttcttgaaatgttctttaataagatggaaagagtttgcaaagactaatatactaact |
5577316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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