View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_high_165 (Length: 239)

Name: NF2519_high_165
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_high_165
NF2519_high_165
[»] chr8 (2 HSPs)
chr8 (1-223)||(5311889-5312111)
chr8 (4-222)||(5304693-5304896)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5312111 - 5311889
Alignment:
Q  1 tcggggacaccatgagttcctatatgaccaagattttataaaaaggctcaaaataacaacaatcaaattttagtgttttgaacttaataaattactgtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5312111 tcggggacaccatgagttcctatatgaccaagattttataaaaaggctcaaaataacaacaatcaaattttagtgttttgaacttaataaaatactgtcc 5312012  T
Q  101 atgaatttcaacaatcatagtcaaatgtgcaagaaagaagatacattcatgaactgcatgaacaagcagtctttgctttatataaaatctggaatcatgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5312011 atgaatttcaacaatcatagtcaaatgtgcaagaaagaagatacattcatgaactgcatgaacaagcattctttgctttatataaaatctggaatcatgg 5311912  T
Q  201 tttgtgacatgcatgaatcatac 223  Q
    |||||||||||||||||||||||    
T  5311911 tttgtgacatgcatgaatcatac 5311889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 5304896 - 5304693
Alignment:
Q  4 gggacaccatgagttcctatatgaccaagattttataaaaaggctcaaaataacaacaatcaaattttagtgttttgaacttaataaattactgtccatg 103  Q
    |||||||||||||||||||||| ||||      | |||| |||| ||||  | ||||||||||| |||||||| ||||||||| |||| ||||||||||     
T  5304896 gggacaccatgagttcctatataacca------tttaaacaggcacaaagaagcaacaatcaaagtttagtgtcttgaacttagtaaaatactgtccata 5304803  T
Q  104 aatttcaacaatcatagtcaaatgtgcaagaaagaagatacattcatgaactgcatgaacaagcagtctttgctttatataaaatctggaatcatggttt 203  Q
    || |||||||| ||||||||| |||||||||||  ||||  ||||||||||         ||| | ||||| ||||||||||| ||||||||||||||||    
T  5304802 aaattcaacaaccatagtcaactgtgcaagaaacgagatgaattcatgaac---------aagtaatctttactttatataaattctggaatcatggttt 5304712  T
Q  204 gtgacatgcatgaatcata 222  Q
    |||||||||||||||||||    
T  5304711 gtgacatgcatgaatcata 5304693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University