View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_166 (Length: 238)
Name: NF2519_high_166
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_166 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33107263 - 33107043
Alignment:
| Q |
1 |
tccagggaatcttgagacagaacagttgaaaaaagagtatgtctgtttcatgaaaggtgttgtttctgctcctttgaatttgccaggaactgcatacaga |
100 |
Q |
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| T |
33107263 |
tccagggaatcttgagacagaacagttgaaaaaagagtatgtctgtttcatgaaaggtgttgtttctgctcctttgaatttgccaggaactgcatacaga |
33107164 |
T |
|
| Q |
101 |
aaagcattaaaggtaataataaatnnnnnnntagataacattaaatatttgtttgaattgacggtaaatttgacataattacagccgcacgtaattttgt |
200 |
Q |
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| T |
33107163 |
aaagcattaaaggtaataataaaaaaaaaaatagataacattaaatatttgtttgaattgacggtaaatttgacataattacagccgcacgtaattttgt |
33107064 |
T |
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| Q |
201 |
tcgatcagtgtagttttaact |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33107063 |
tcgatcagtgtagttttaact |
33107043 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 7618595 - 7618678
Alignment:
| Q |
32 |
aaagagtatgtctgtttcatgaaaggtgttgtttctgctcctttgaatttgccaggaactgcatacagaaaagcattaaaggta |
115 |
Q |
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| T |
7618595 |
aaagagtatgttacttttatgaaaggtgttgtatcagcaccattgaattttcctggaactgcatactggagagcattaaaggta |
7618678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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