View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_174 (Length: 236)
Name: NF2519_high_174
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_174 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 10746159 - 10745952
Alignment:
| Q |
16 |
atttgattatgttatatgtagactttgtgcaacatactagttgctatacataagtaatgttgtattcttttgtaattcaataaagtgaaattgacacttt |
115 |
Q |
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| T |
10746159 |
atttgattatgttatatgtagactttgtgcaacatactagttgctatacataagtaatgttgtattcttttgtaattcaataaagtgaaattgacacttt |
10746060 |
T |
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| Q |
116 |
ctttgctatacatatttatctccattcctttgtcatgttatttcattttattaagaattttcactgtagtcaaaattcaggtacaaaattgttacatgta |
215 |
Q |
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| T |
10746059 |
ctttgctatacatatttatctccattcctttgtcatgttatttcattttattaagaattttcactgtagtcaaaattcaggtacaaaattgttacatgta |
10745960 |
T |
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| Q |
216 |
tttttagc |
223 |
Q |
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|||||||| |
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| T |
10745959 |
tttttagc |
10745952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 10613324 - 10613384
Alignment:
| Q |
43 |
tgcaacatactagttgctatacataagtaatgttgtattcttttgtaattcaataaagtga |
103 |
Q |
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| T |
10613324 |
tgcaacctactagttgctatagataagtaatgtggtattgctttctaattcaatgaagtga |
10613384 |
T |
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