View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_175 (Length: 235)
Name: NF2519_high_175
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_175 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5269338 - 5269557
Alignment:
| Q |
1 |
tagtgaatgcttctctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcat |
100 |
Q |
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| T |
5269338 |
tagtgaatgcttctctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcat |
5269437 |
T |
|
| Q |
101 |
ggttgcactctttgtcccccaaacatgtgcaaggtataatatagaagttattctctcttt---gtatttagtttcaaatatatgattaaatatactaaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5269438 |
ggttgcactctttgtcccccaaacatgtgcaaggtataatatagaagttattctctctttgtagtatttagtttcaaatatatgattaaatatactaaag |
5269537 |
T |
|
| Q |
198 |
tttttcttgaatcattgttt |
217 |
Q |
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|||||||||||||||||||| |
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| T |
5269538 |
tttttcttgaatcattgttt |
5269557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 5250119 - 5250255
Alignment:
| Q |
2 |
agtgaatgcttctctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatg |
101 |
Q |
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||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||| | || | ||||| ||||| ||||| || | ||| |||| |
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| T |
5250119 |
agtgaatacttcactgagattaacactaatcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatg |
5250218 |
T |
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| Q |
102 |
gttgcactctttgtcccccaaacatgtgcaaggtata |
138 |
Q |
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| T |
5250219 |
gttgcattctctgtcctccaaatatgtgcaaggtata |
5250255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 5272443 - 5272303
Alignment:
| Q |
1 |
tagtgaatgcttctctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcat |
100 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| | | | || ||||| ||||| ||||| || ||||| ||| |
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| T |
5272443 |
tagtgaatgcttctcagagattaactctaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacat |
5272344 |
T |
|
| Q |
101 |
ggttg---cactctttgtcccccaaacatgtgcaaggtata |
138 |
Q |
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||||| || | |||| || |||||||||||||||||||| |
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| T |
5272343 |
ggttgcaacaatgtttgccctccaaacatgtgcaaggtata |
5272303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 5276421 - 5276282
Alignment:
| Q |
2 |
agtgaatgcttctctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatg |
101 |
Q |
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||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| | | | || ||||| ||||| ||||| || ||||| |||| |
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| T |
5276421 |
agtgaatacttcactgagattaacactaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatg |
5276322 |
T |
|
| Q |
102 |
gttg---cactctttgtcccccaaacatgtgcaaggtata |
138 |
Q |
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|||| || | |||| || |||||||||||||||||||| |
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| T |
5276321 |
gttgcaacaatgtttgccctccaaacatgtgcaaggtata |
5276282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 14944507 - 14944624
Alignment:
| Q |
10 |
cttctctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttgcact |
109 |
Q |
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|||||| ||||||||||| |||| ||||||||||||| ||||||| ||| ||| | | || || || ||||||||| ||||| |||||||||||| |
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| T |
14944507 |
cttctcagagattaacactaatcttggttatgttaatgaagaaggtagactaagaatgtcaccatacca---cttcaacaaggcttcacatggttgcact |
14944603 |
T |
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| Q |
110 |
ctttgtcccccaaacatgtgc |
130 |
Q |
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|||| || |||||||||||| |
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| T |
14944604 |
ctttaccctccaaacatgtgc |
14944624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 26314810 - 26314755
Alignment:
| Q |
5 |
gaatgcttctctgagattaacaccaatcctggttatgttaatcaagaaggaagatt |
60 |
Q |
| |
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||||| ||||| ||||||||||| ||||| ||||||||| || ||||||||||||| |
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| T |
26314810 |
gaatgtttctcggagattaacactaatccaggttatgttgatgaagaaggaagatt |
26314755 |
T |
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