View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_high_18 (Length: 502)

Name: NF2519_high_18
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_high_18
NF2519_high_18
[»] chr4 (6 HSPs)
chr4 (20-317)||(47116459-47116758)
chr4 (362-479)||(11882887-11883004)
chr4 (370-477)||(33018530-33018637)
chr4 (373-486)||(33432813-33432926)
chr4 (369-479)||(35347163-35347273)
chr4 (131-204)||(46949727-46949800)
[»] chr7 (1 HSPs)
chr7 (370-486)||(26761470-26761586)
[»] chr8 (1 HSPs)
chr8 (363-479)||(34053192-34053308)
[»] chr5 (1 HSPs)
chr5 (363-479)||(43070071-43070187)
[»] chr3 (3 HSPs)
chr3 (365-480)||(12008998-12009113)
chr3 (362-479)||(47669131-47669248)
chr3 (374-483)||(51985890-51985999)
[»] chr1 (2 HSPs)
chr1 (365-480)||(47124691-47124806)
chr1 (369-480)||(7298553-7298664)
[»] chr6 (1 HSPs)
chr6 (362-480)||(6535166-6535284)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 47116758 - 47116459
Alignment:
Q  20 attacaattatttgcttgtcatgattttattggattataagnnnnnnnt--gttatatcatcaatatatagaaattaatctcaaaatnnnnnnngtcata 117  Q
    |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||       ||||||    
T  47116758 attacaattatttgcttgtcatgattttattggattataagcaaaaaaaaagttatatcatcaatatatagaaattaatctcaaaataaaaaaagtcata 47116659  T
Q  118 ccaacgtgtataaaaattaatctcaaaataacaatatcattatattttaatacaacattgaattgttaccaaattttaaaatttaaagataattaatgta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||    
T  47116658 ccaacgtgtataaaaattaatctcaaaataacaatatcattatattttaatacaacattgaattgttaacaaattttaaaatttaaagacaattaaagta 47116559  T
Q  218 aacaaagatagacaatcactacaaaaacttggacaacaaataaaaataagttatgacatccttttataaaatcacgtaacttttgtacaaataattcaaa 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47116558 aacaaagatagacaatcaccacaaaaacttggacaacaaataaaaataagttattacatccttttataaaatcacgtaacttttgtacaaataattcaaa 47116459  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 362 - 479
Target Start/End: Complemental strand, 11883004 - 11882887
Alignment:
Q  362 gaccttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcat 461  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11883004 gaccttcggacttttcctaaccgttagattggttgaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcat 11882905  T
Q  462 gagctttcacctttctct 479  Q
    ||||||||||||||||||    
T  11882904 gagctttcacctttctct 11882887  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 370 - 477
Target Start/End: Complemental strand, 33018637 - 33018530
Alignment:
Q  370 gacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagctttc 469  Q
    ||||||| | || ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33018637 gaccttttccaatcgttagattggttgaacacatcatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcatgagctttc 33018538  T
Q  470 acctttct 477  Q
    ||||||||    
T  33018537 acctttct 33018530  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 373 - 486
Target Start/End: Original strand, 33432813 - 33432926
Alignment:
Q  373 ctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagctttcacc 472  Q
    |||||||||  |||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  33432813 ctttcctaatagttagattggttgaacacaccatagattaaatacactgaattatcttttcatttgtcttcttccctctcaactctcatgagctttcccc 33432912  T
Q  473 tttctctatatccc 486  Q
    ||||||||||||||    
T  33432913 tttctctatatccc 33432926  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 369 - 479
Target Start/End: Complemental strand, 35347273 - 35347163
Alignment:
Q  369 tgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagcttt 468  Q
    |||| ||| |||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  35347273 tgactttttctaaccgttaaattagttaaacacatcatagatcgaatacacttgattattttttcatttgtcttcttccctctcaactctcatgagcttt 35347174  T
Q  469 cacctttctct 479  Q
    |||||||||||    
T  35347173 cacctttctct 35347163  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 46949800 - 46949727
Alignment:
Q  131 aaattaatctcaaaataacaatatcattatattttaatacaacattgaattgttaccaaattttaaaatttaaa 204  Q
    |||||||||||| |||| ||| |||||  ||||||||||||||||  |||||||||||||||||||||||||||    
T  46949800 aaattaatctcataataccaacatcatcgtattttaatacaacatacaattgttaccaaattttaaaatttaaa 46949727  T

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Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 486
Target Start/End: Original strand, 26761470 - 26761586
Alignment:
Q  370 gacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagctttc 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26761470 gacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcatgagctttc 26761569  T
Q  470 acctttctctatatccc 486  Q
    |||||||||||||||||    
T  26761570 acctttctctatatccc 26761586  T

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Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 363 - 479
Target Start/End: Original strand, 34053192 - 34053308
Alignment:
Q  363 accttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatg 462  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34053192 accttctgacatttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcatg 34053291  T
Q  463 agctttcacctttctct 479  Q
    |||||| ||||||||||    
T  34053292 agcttttacctttctct 34053308  T

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Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 363 - 479
Target Start/End: Complemental strand, 43070187 - 43070071
Alignment:
Q  363 accttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatg 462  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43070187 accttcggacctttcctaaccgttagattggttaaacacatcatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcatg 43070088  T
Q  463 agctttcacctttctct 479  Q
    |||||||||||||||||    
T  43070087 agctttcacctttctct 43070071  T

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Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 365 - 480
Target Start/End: Original strand, 12008998 - 12009113
Alignment:
Q  365 cttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgag 464  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  12008998 cttctgacattttctaaccgttagattggttaaacacaccatagatcaaatacacttgattatattttcatttgtcttcttccctctcaactctcatgag 12009097  T
Q  465 ctttcacctttctcta 480  Q
    ||||||||||||||||    
T  12009098 ctttcacctttctcta 12009113  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 362 - 479
Target Start/End: Complemental strand, 47669248 - 47669131
Alignment:
Q  362 gaccttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcat 461  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47669248 gaccttctcacatttcctaaccgttagattggttaaacacaccagagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcat 47669149  T
Q  462 gagctttcacctttctct 479  Q
    ||||||||| ||||||||    
T  47669148 gagctttcatctttctct 47669131  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 374 - 483
Target Start/End: Original strand, 51985890 - 51985999
Alignment:
Q  374 tttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagctttcacct 473  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  51985890 tttcctaaccgttagattggttaaacataccatagatcaaatacacttgattatcttttcatttgtcttctttcctctcaactctcatgagctttcacct 51985989  T
Q  474 ttctctatat 483  Q
    ||||||||||    
T  51985990 ttctctatat 51985999  T

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Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 365 - 480
Target Start/End: Original strand, 47124691 - 47124806
Alignment:
Q  365 cttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgag 464  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  47124691 cttcagacctttcctaaccgttagattggttgaacacaccatagatcaaatacacctgattatcttttcatttgtcttcttccctctcaactctcatgag 47124790  T
Q  465 ctttcacctttctcta 480  Q
    |||| |||||||||||    
T  47124791 cttttacctttctcta 47124806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 369 - 480
Target Start/End: Complemental strand, 7298664 - 7298553
Alignment:
Q  369 tgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagcttt 468  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| | ||||||||||||||||||    
T  7298664 tgacatttcctaaccgttagattggttaaacacaccatagatcaaatacacttaattatattttcctttgtcttcttccttctcaactctcatgagcttt 7298565  T
Q  469 cacctttctcta 480  Q
    ||||||||||||    
T  7298564 cacctttctcta 7298553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 362 - 480
Target Start/End: Complemental strand, 6535284 - 6535166
Alignment:
Q  362 gaccttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcat 461  Q
    ||||||| |||||||||||| |||||||||| || ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  6535284 gaccttcggacctttcctaatcgttagattgattgaacacaccacagatcaaatacatttgattatcttttcatttgtcttcttccctctcaactctcat 6535185  T
Q  462 gagctttcacctttctcta 480  Q
    |||||||||||||||||||    
T  6535184 gagctttcacctttctcta 6535166  T

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