View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_183 (Length: 219)
Name: NF2519_high_183
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_183 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 45050022 - 45049828
Alignment:
| Q |
8 |
ccaagaatataccataattgttgggatcttcttaaactctgaaatggacataatttaatgaaaaatatatgatttaacatcaagatagatcttaatccac |
107 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45050022 |
ccaaaaatataccataattgttaggatcttcttaaactctgaaatggacataatttaatgaaaaatatatgatttaacatcaagatagatcttaatccac |
45049923 |
T |
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| Q |
108 |
acgctacataagttagagacaaataaatggtttaacacttaaacactaagatatcaaaccaatttaaaaagcacaaaaaatgttggcctctaata |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45049922 |
acgctacataagttagagacaaataaatggtttaacacttaaacactaagatatcaaaccaatttaaaaagcacaaaaaatgttggcctctaata |
45049828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 26008997 - 26008861
Alignment:
| Q |
8 |
ccaagaatataccataattgttgggatcttcttaaactctgaaatggacataatttaatgaaaaatatatgatttaacatcaagatagatcttaatccac |
107 |
Q |
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|||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26008997 |
ccaaaaatataccataattgttgggatctttttaaactccgaaatggacataatttaatgaaaaatatatgatttagcatcaagatagatcttaatccac |
26008898 |
T |
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| Q |
108 |
acgctacataagttagagacaaataaatggtttaaca |
144 |
Q |
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| T |
26008897 |
atgcttcataagttagagacaaataaatggtttaaca |
26008861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 26008791 - 26008730
Alignment:
| Q |
141 |
aacacttaaacactaagatatcaaaccaatttaaaaagcacaaaaaatgttggcctctaata |
202 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26008791 |
aacacttaaacactaagatatcaaaacaatttaaaaagcacaaaaaatgttggcctctaata |
26008730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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