View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_19 (Length: 500)
Name: NF2519_high_19
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 49054729 - 49054241
Alignment:
| Q |
1 |
tcatcatggctactctccccttaaggttacatcactacgaaaattgttgtagatcactgtaatatcccgtttttcaaataaaatgtttttctacttgatg |
100 |
Q |
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| T |
49054729 |
tcatcatggctacttggcccttaaggttacatcactacgaaaattgttgtagatcattgtaatatcccgtttttcaaataaaatgtttttctacttgatg |
49054630 |
T |
|
| Q |
101 |
caagggtatagcacataggttgcacataccacctttacacactcaatacattatgctacttaaattgatttttggtgatttgtgaggagcgaacacttgt |
200 |
Q |
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| T |
49054629 |
caagggtatagcacataggttgcacataccacctttacacactcaatacattatgctacttaaattgatttttggtgatttgtgaggagcaaacacttgt |
49054530 |
T |
|
| Q |
201 |
ctcctcctcaaataatttcctctatttcatcacttttgttgctgcaactatatttacatggttttatctcctgaaaattaaagttgagtatcctgttgtt |
300 |
Q |
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| T |
49054529 |
ctcctcctcaaataatttcctctatttcatcacttttgttgctgcaactatatttacatggttttatctcctgaaaattaaagttgagtatcctgttatt |
49054430 |
T |
|
| Q |
301 |
tttaaaaaagtttaaggctatggttgaatcacaatttgattttcctaccaaatcacttgaaactatttggcaaggtgaatttaaaccactaatcacatta |
400 |
Q |
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| T |
49054429 |
tttaaaaaagtttaaggctatggttgaatcacaatttgattttcctaccaaatcacttgaaactatttggcaaggtgaatttaaaccactaatcacatta |
49054330 |
T |
|
| Q |
401 |
ttcatatgcttaattgccatttcactcactattgaaccaattatggttcaataagttaaccagactgcaatgtatttaggatcaaactg |
489 |
Q |
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| T |
49054329 |
ttcatatgcttaattgccatttcactcactattgaaccaattatggttcaattagttaaccagactgcaatatatttaggaccaaactg |
49054241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 49056088 - 49055971
Alignment:
| Q |
192 |
aacacttgtctcctcctcaaataatttcctctatttcatcacttttgt---tgctgcaactatatttacatggttttatctcctgaaaattaaagttgag |
288 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| || |||| ||||||||||||||||| |||||||||| |
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| T |
49056088 |
aacacttgtctcctcctcaaataatttcctctatttcaatacttttgttgatgatgcaactaggttaacattgttttatctcctgaaaaataaagttgag |
49055989 |
T |
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| Q |
289 |
tatcctgttgtttttaaa |
306 |
Q |
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||||| ||||||||||| |
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| T |
49055988 |
aatcctattgtttttaaa |
49055971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 429
Target Start/End: Complemental strand, 49055819 - 49055721
Alignment:
| Q |
331 |
acaatttgattttcctaccaaatcacttgaaactatttggcaaggtgaatttaaaccactaatcacattattcatatgcttaattgccatttcactcac |
429 |
Q |
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||||| |||||||||||||||||| ||| ||||| ||||| |||||||| | ||| || ||||||||||||||| ||||| || ||||||||||||| |
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| T |
49055819 |
acaatatgattttcctaccaaatcccttcaaactgtttgggaaggtgaactaaaaacatccatcacattattcataggcttattttccatttcactcac |
49055721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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