View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_high_26 (Length: 470)

Name: NF2519_high_26
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_high_26
NF2519_high_26
[»] chr2 (2 HSPs)
chr2 (16-151)||(44911914-44912049)
chr2 (143-181)||(23244852-23244890)
[»] chr1 (2 HSPs)
chr1 (85-181)||(3929116-3929211)
chr1 (16-70)||(3929019-3929073)
[»] chr4 (3 HSPs)
chr4 (72-177)||(6354668-6354772)
chr4 (16-73)||(6354579-6354636)
chr4 (95-179)||(23531119-23531202)
[»] chr5 (1 HSPs)
chr5 (143-181)||(6437366-6437404)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 44911914 - 44912049
Alignment:
Q  16 atagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggatgaattgaaaggctgaaaagattatgctgtggttat 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  44911914 atagccttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggatgaaacgaaaggctgaaaagattacgctgtggttat 44912013  T
Q  116 aaaagttagagatcatagtaaatatttgatccaatg 151  Q
    |||||||||||||||||||||| |||||||||||||    
T  44912014 aaaagttagagatcatagtaaagatttgatccaatg 44912049  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 23244890 - 23244852
Alignment:
Q  143 gatccaatggtcaccatttgatcctctcatcctctcatt 181  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  23244890 gatccaatggtcaccatttgatcatctcaccctctcatt 23244852  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 3929116 - 3929211
Alignment:
Q  85 tgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctcatt 181  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  3929116 tgaaagggtgaaaagattacgctgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgatcctctcatcctctcatt 3929211  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 3929019 - 3929073
Alignment:
Q  16 atagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgca 70  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3929019 atagccttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgca 3929073  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 6354668 - 6354772
Alignment:
Q  72 caaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctca 171  Q
    ||||||||||||  ||||||||||||| ||||   ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  6354668 caaagggatgaaacgaaaggctgaaaatattacaatgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgattctctca 6354766  T
Q  172 tcctct 177  Q
    ||||||    
T  6354767 tcctct 6354772  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 6354579 - 6354636
Alignment:
Q  16 atagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagca 73  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6354579 atagtcttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgcagca 6354636  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 23531202 - 23531119
Alignment:
Q  95 aaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctca 179  Q
    ||||||||| ||||  ||||| ||| ||| | ||||| ||||| |||| ||||||||||||  |||||||||||||| |||||||    
T  23531202 aaaagattaagctgcagttattaaaattaaacatcatggtaaagattt-atccaatggtcaggatttgatcctctcaccctctca 23531119  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 6437366 - 6437404
Alignment:
Q  143 gatccaatggtcaccatttgatcctctcatcctctcatt 181  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  6437366 gatccaatggtcaccatttgatcatctcaccctctcatt 6437404  T

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