View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_34 (Length: 451)
Name: NF2519_high_34
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 34550005 - 34549582
Alignment:
| Q |
17 |
aaaacttgtgtaaaccaaatccgtgagtctttgtaggtaactctgtaaacactctttgagccttgatgcataccctaacccttgtgataattaaagtgct |
116 |
Q |
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| T |
34550005 |
aaaacttgtgtaaaccaaatccgtgagcctttgtaggtaactctgtaaacactctttgagccttgatgcctaccctaacccttgtgataattaaagtgtt |
34549906 |
T |
|
| Q |
117 |
gt-----gcccctcacccaaagcacattgaatttgacatccattttgtttaagaaagagtaattgccaaacaactcattattttgcatgttcctaggtct |
211 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
34549905 |
gtggcccggccctcacccaaagcacattgaatttgacatccattttgtttaagaaagagtaattgccaaacaacttgttatgttgcatgttcctaggtct |
34549806 |
T |
|
| Q |
212 |
tacaaatttcagactcattcacaaaaccactctacccctgctttgattccatacctaccaaactcaaggtcttttctgcgaaggaaccatcaattaagtt |
311 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34549805 |
tacaaatttcagactcattcactaaaccactctacccctgctttgattccatacctaccaaactcaaggtgttttctgcgaaggaaccatcaattaagtt |
34549706 |
T |
|
| Q |
312 |
gggtggggatatccatcaatgtatatgaaacaagtgcgttaatcatcactatagctatcacaagggttagttaatgtggttaaatttctcaactgatgta |
411 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549705 |
gggtggggatatccatcaatgtatatgaaacaa-tgcgttaatcatcattatagctatcacaagggttagttaatgtggttaaatttctcaactgatgta |
34549607 |
T |
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| Q |
412 |
acgaagttattagttagggtctctg |
436 |
Q |
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||||||||||||||||||||||||| |
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| T |
34549606 |
acgaagttattagttagggtctctg |
34549582 |
T |
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