View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_41 (Length: 425)
Name: NF2519_high_41
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 38372129 - 38372521
Alignment:
| Q |
17 |
atctataaaacattgatgtcaaacatttgaaagattattaannnnnnnnatagctgacgtttgaagttgtagtatccaacttactagtatatttttatta |
116 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38372129 |
atctttaaaacgttgatgtcaaacatttgaaagattattaaatttttttatagctgacgtttgaagttgtagtatccaacttactagtatatttttatta |
38372228 |
T |
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| Q |
117 |
caagcacgtttctcaggttgaagcatggtagaaagactactaaaatagtcttgaaagtttccaaaaacctgccatgcaatgcaaattaaatgatgattcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38372229 |
caagcacgtttctcaggttgaagcatggtagaaagactactaaaatagtcttgaaagtttccaaaaacctgccatgcaatgcaaattaaatgatgattcc |
38372328 |
T |
|
| Q |
217 |
gttattcgtttatgcaactaccgacaaaaggtgttcctaaggtcaatttaagacatgaaaaatcaatcttatttacatggtattgttgacattttcagtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38372329 |
gttattcgtttatgcaactaccgacaaaaggtgttcctaaggtcaatttaagacatgaaaaatcaatcttatttacatggtattgttgacattttcagtg |
38372428 |
T |
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| Q |
317 |
gcaggaaaggaaatttattacataaaagaatagaccatgtattctccccaagctttgaataagtagtactagttcctcctccaacagagaatg |
409 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38372429 |
gcaggaaaggaaatttatgacataaaagaatagaccatgaattctccccaagctttgaataagtagtactagttcctcctccaacagagaatg |
38372521 |
T |
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