View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_high_43 (Length: 422)
Name: NF2519_high_43
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 6955118 - 6954892
Alignment:
| Q |
16 |
cacataatacatacctgttctataattggaagatatccaccaacatttggaagtatggtaccatttgggagtattccaccttcacctcccactccaacag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6955118 |
cacataatacatacctgttctataattggaagatatccaccaacattaggaagtatggtaccatttgggagaattccaccttcacctcccactccaacag |
6955019 |
T |
|
| Q |
116 |
caatgtcatctctccccatcatgtaaagtatgtcatatacttgattcactgcatgaccaccatttgtccaagcatttgcactcagagtcactccctacac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6955018 |
caatgtcatctctccccatcatgtaaagtatgtcatatacttgattcactgcatgcccagcatttgtccaagcatttgcactcagagtcactccctacac |
6954919 |
T |
|
| Q |
216 |
catgctcaaaagcaacacaaaatataa |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6954918 |
catgctcaaaagcaacacaaaatataa |
6954892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 71 - 239
Target Start/End: Complemental strand, 6964791 - 6964623
Alignment:
| Q |
71 |
tggtaccatttgggagtattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgtaaagtatgtcatatacttgattcactgcatg |
170 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6964791 |
tggtaccatttgggagaattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgtaaagtatgtcatatacttgattcactgcatg |
6964692 |
T |
|
| Q |
171 |
accaccatttgtccaagcatttgcactcagagtcactccctacaccatgctcaaaagcaacacaaaata |
239 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6964691 |
cccagcatttgtccaagcatttgcactcagagtcactccctacaccatgctcaaaagcaacacaaaata |
6964623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 272 - 422
Target Start/End: Complemental strand, 6964539 - 6964390
Alignment:
| Q |
272 |
aatgcaaaacatattcaagccaaattgcaatgtcaacatcagaagatacaaattgtctggtttttacaacacattttgagacaaatagtataatactatt |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6964539 |
aatgcaaaacatattcaagccaaattgcaatgtcaacatcagaagatacaaattgtctggtttttacaacacattttgagacaaatagtataatactatt |
6964440 |
T |
|
| Q |
372 |
gacaacttttaaaaacacaccctttatttaacaaaaggaaaaaagtacacc |
422 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6964439 |
gacaactttt-aaaacacaccctttatttaaaaaaaggaaaaaagtacacc |
6964390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 271 - 422
Target Start/End: Complemental strand, 6954826 - 6954675
Alignment:
| Q |
271 |
aaatgcaaaacatattcaagccaaattgcaatgtcaacatcagaagatacaaattgtctggtttttacaacacattttgagacaaatagtataatactat |
370 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954826 |
aaatgcaaaacataatcaagccaaatttcattgtcaacatcagaagatacaaattgtctggtttttacaacacattttgagacaaatagtataatactat |
6954727 |
T |
|
| Q |
371 |
tgacaacttttaaaaacacaccctttatttaacaaaaggaaaaaagtacacc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6954726 |
tgacaacttttaaaaacacaccctttatttaaaaaaaggaaaaaagtacacc |
6954675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 6965232 - 6965185
Alignment:
| Q |
26 |
atacctgttctataattggaagatatccaccaacatttggaagtatgg |
73 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
6965232 |
atacctgttcaatgattggaagatatccaccaacatttggaagtatgg |
6965185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 49104939 - 49105064
Alignment:
| Q |
27 |
tacctgttctataattggaagatatccaccaacatttggaagtatggtaccatttgggagtattccaccttcacctcccactccaacagcaatgtcatct |
126 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
49104939 |
tacctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatct |
49105038 |
T |
|
| Q |
127 |
ctccccatcatgtaaagtatgtcata |
152 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
49105039 |
ctccccatcatgtaaagtaagtcata |
49105064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 18133629 - 18133771
Alignment:
| Q |
28 |
acctgttctataattggaagatatccaccaacatttggaagtatggtaccatttgggagtattccaccttcacctcccactccaacagcaatgtcatctc |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| || | ||||||||||| ||||||| |
|
|
| T |
18133629 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
18133728 |
T |
|
| Q |
128 |
tccccatcatgtaaagtatgtcatatacttgattcactgcatg |
170 |
Q |
| |
|
||||||||||||| || | |||||| | ||| ||||| ||||| |
|
|
| T |
18133729 |
tccccatcatgtacagcaagtcataaatttggttcacagcatg |
18133771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 49120839 - 49120981
Alignment:
| Q |
28 |
acctgttctataattggaagatatccaccaacatttggaagtatggtaccatttgggagtattccaccttcacctcccactccaacagcaatgtcatctc |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| || | ||||||||||| ||||||| |
|
|
| T |
49120839 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
49120938 |
T |
|
| Q |
128 |
tccccatcatgtaaagtatgtcatatacttgattcactgcatg |
170 |
Q |
| |
|
||||||||||||| || | |||||| | ||| ||||| ||||| |
|
|
| T |
49120939 |
tccccatcatgtacagcaagtcataaatttggttcacagcatg |
49120981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University