View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_48 (Length: 405)
Name: NF2519_high_48
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 50 - 389
Target Start/End: Complemental strand, 28030302 - 28029963
Alignment:
| Q |
50 |
agcaatataatgcaaaaccttctacttcaactttatccatatctatatctatctaaatatttcttcgcttcatggaaaagaaacttctcatgcacaaatt |
149 |
Q |
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| T |
28030302 |
agcaatataatgcaaaaccttctacttcaactttatccatatctatatctatctaaatatttcttcgcttcatggaaaagaaacttctcatgcacaaatt |
28030203 |
T |
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| Q |
150 |
catcttcacaacaatgaacaaaaactgtaacatacttttaacattactttagtgtattatggtatcttcgtatttgagttattgaatctgctaggactat |
249 |
Q |
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| T |
28030202 |
catcttcacaacaatgaacaaaaactgtaacatacttttaacattactttagtgtattatggtatcttcgtatttgagttatggaatctgctaggactat |
28030103 |
T |
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| Q |
250 |
gttttgttcttctccactttgtcctccaagaactcaccattggaacactcttccttcatcttcttatacttctggtaatgtaacacttttaatttcaatt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28030102 |
gttttgttcttctccactttgtcctccaagaactcaccattggaacactcttccttcatcttcttatacttctggtaatgtaacacttttaatttcaatt |
28030003 |
T |
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| Q |
350 |
tttgtattctttttctgtatcttaaagcatggttaatgat |
389 |
Q |
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| T |
28030002 |
tttgtattctttttctgtatcttaaagcatggttaatgat |
28029963 |
T |
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