View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_5 (Length: 707)
Name: NF2519_high_5
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 4e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 196 - 347
Target Start/End: Original strand, 40925154 - 40925306
Alignment:
| Q |
196 |
taatttgcaagggttcacaaaaagtgaagataacccaagaggataaatcctttt-ttctaaaaataggaaagggagggaaatcaagtatagatgaacatt |
294 |
Q |
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| T |
40925154 |
taatttgcaagggttcacaaaaagtgaagataacccaagaggataaatcctttttttctaaaaaaaggaaagggagggaaatcaagtatagatgaacatt |
40925253 |
T |
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| Q |
295 |
ttttaaaattggacgtgttaaagttaaaaaatcaaaggttgttattttaattt |
347 |
Q |
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| T |
40925254 |
ttttagaattggacgtgttaaagttaaaaaatcaaaggttgttattttaattt |
40925306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 40925333 - 40925503
Alignment:
| Q |
337 |
tattttaatttattaattaaagattgatattattcatatactgtagagtctattaagggtggacggtggacctccaaagtttatg------------acc |
424 |
Q |
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| T |
40925333 |
tattttaatttattaattaaagattgatattattcatatactgtagagtctattaagggtggacggtggacctccaaagtttatgacccaaacccaaacc |
40925432 |
T |
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| Q |
425 |
caaacatcactaaaaattaaaaagtggaaccctctcttgcattccaaaatttgacaccctcgggtacattc |
495 |
Q |
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| T |
40925433 |
caaacatcactaaaaattaaaaagtggaaccctctcttgcattccaaaatttgacaccctcgggtacattc |
40925503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 557 - 690
Target Start/End: Original strand, 40925565 - 40925698
Alignment:
| Q |
557 |
cacactctattgacatttaagtccaaacaataatacaaattattcctctctatgtagtaagatgctcaaaataaaaatgaataatattcgtttcacttcc |
656 |
Q |
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| T |
40925565 |
cacactctattgacatttaagtccaagcaataatacaaatgattcctctctatgtagtaagatgctcaaaataaaaatgaataatattcgtttcacttcc |
40925664 |
T |
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| Q |
657 |
ggaaaataattgtgacacttgtgggagaaattag |
690 |
Q |
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| T |
40925665 |
ggaaaataattgtgacacttgtgggagaaattag |
40925698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 8158875 - 8158785
Alignment:
| Q |
86 |
acacaagaagaaatgtaataataactatttgtaatatagtgggaaacgaagcaaataaaaacttgtaataggaatgagatgtttgatttaaatca |
180 |
Q |
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| T |
8158875 |
acacaagaagaaatgtaacaa---ctattagtaatatagtgggata-gaaataaataaaaattagtaataacaatgagatgtttgatttaaatca |
8158785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 8149651 - 8149604
Alignment:
| Q |
133 |
gaagcaaataaaaacttgtaataggaatgagatgtttgatttaaatca |
180 |
Q |
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| T |
8149651 |
gaagcaaataaaaatttgtaataccattgagatgtttgatttaaatca |
8149604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 8154074 - 8154030
Alignment:
| Q |
21 |
aaaaggtgtggcaaccgtcttgtaggggtagaattatatgcttaat |
66 |
Q |
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| T |
8154074 |
aaaaggtgtggcaaccgtcttgtaggagtagaa-gatatgcttaat |
8154030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 8153854 - 8153822
Alignment:
| Q |
151 |
taataggaatgagatgtttgatttaaatcaatt |
183 |
Q |
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| T |
8153854 |
taatagtaatgagatgtttgatttaaatcaatt |
8153822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 8153945 - 8153887
Alignment:
| Q |
84 |
aaacacaagaagaaatgtaataataactatttgtaatatagtgggaaacgaagcaaataaaaa |
146 |
Q |
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| T |
8153945 |
aaacacaagaagaaatgta---ataactacttgtaatatagtgtg-aacgaagtaaataaaaa |
8153887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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