View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_50 (Length: 403)
Name: NF2519_high_50
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_50 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 39296411 - 39296011
Alignment:
| Q |
1 |
caagcaatcagaataggtgattcttttttccttttatgtactcatacctaaatagaaacaaaagatgatatttgatattaagaggcacatgttcaatgtc |
100 |
Q |
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| T |
39296411 |
caagcaatcagaataggtgattcttttttccttttatgtactcatacctaaatagaaacaaa-gatgatatttgatattaagaggcacatgttcaatgtc |
39296313 |
T |
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| Q |
101 |
atgcaccattttttatgaccaattagttatatattatgaatgtcagcagaaaagatttcctgctagtattggtatctctctcaaaaaaggcacattgctc |
200 |
Q |
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| T |
39296312 |
atgcaccattttttatgaccaattagttatatattatgaatgtcagcagaaaagatttcctgctagtattggtatctctctcaaaaa-ggcacattgctc |
39296214 |
T |
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| Q |
201 |
gcttaatgcatgaatggtaacagatagattctgctttatttctgctcgcttaatattgctgcattttaaggctagattcatacccaaatctttggttcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39296213 |
gcttaatgcatgaatggtaacagatagattctgctttatttctgctcgcttaatattgctgcattttaaggctagattcaaacccaaatctttggttcag |
39296114 |
T |
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| Q |
301 |
ctatacacctcatccaaatacttttggttgtgttttgaatgtttaaaccatatatatcataaaacaatatttatatgctttcattctttgatttggatcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296113 |
ctatacacctcatccaaatacttttggttgtgttttgaatgtttaaaccatatatatcataaaacaatatttatatgctttcattctttgatttggatcc |
39296014 |
T |
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| Q |
401 |
ctc |
403 |
Q |
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| T |
39296013 |
ctc |
39296011 |
T |
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