View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_high_61 (Length: 378)

Name: NF2519_high_61
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_high_61
NF2519_high_61
[»] chr2 (2 HSPs)
chr2 (189-362)||(3323926-3324100)
chr2 (193-259)||(33797801-33797867)
[»] chr7 (1 HSPs)
chr7 (193-260)||(48817928-48817995)
[»] chr5 (1 HSPs)
chr5 (189-260)||(7683374-7683445)
[»] chr4 (2 HSPs)
chr4 (193-259)||(18979311-18979377)
chr4 (189-255)||(26370376-26370442)
[»] chr3 (2 HSPs)
chr3 (189-255)||(54548768-54548834)
chr3 (192-255)||(37972418-37972481)
[»] chr1 (2 HSPs)
chr1 (189-255)||(12390109-12390174)
chr1 (189-260)||(12555696-12555767)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 189 - 362
Target Start/End: Complemental strand, 3324100 - 3323926
Alignment:
Q  189 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccactgctgctttaatttctggtagatccaa 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||    
T  3324100 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgggaccactgctgctttaatttctggtaaacccaa 3324001  T
Q  289 tatattgtttttctcc-nnnnnnnttaacaaatatactcgtttcttgtgataaacagcatcaaatatcaagatat 362  Q
    ||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3324000 tatattgtttttctccaaaaaaaattaacaaatatactcgtttcttgtgataaatagcatcaaatatcaagatat 3323926  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 33797801 - 33797867
Alignment:
Q  193 ccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacc 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33797801 ccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacc 33797867  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 48817995 - 48817928
Alignment:
Q  193 ccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48817995 ccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacca 48817928  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 7683445 - 7683374
Alignment:
Q  189 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7683445 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgggacca 7683374  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 18979377 - 18979311
Alignment:
Q  193 ccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacc 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18979377 ccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacc 18979311  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 26370442 - 26370376
Alignment:
Q  189 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 255  Q
    ||||||||||||| |||||||||||||||  |||||||||||  |||||||||||||||||||||||    
T  26370442 ggtcccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgg 26370376  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 54548834 - 54548768
Alignment:
Q  189 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54548834 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 54548768  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 37972481 - 37972418
Alignment:
Q  192 cccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 255  Q
    |||||||||| |||||||||||||||  |||||||||||  |||||||||||||||||||||||    
T  37972481 cccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgg 37972418  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 12390174 - 12390109
Alignment:
Q  189 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 255  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12390174 ggtcccaccgagacttgaactcgg-ttactggattcagagtccaatgtcctaaccgctagaccatgg 12390109  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 12555767 - 12555696
Alignment:
Q  189 ggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacca 260  Q
    ||||||||||||| |||||||||||||||  |||||||||||  ||||||||||||||||||||||| ||||    
T  12555767 ggtcccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgggacca 12555696  T

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