View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_high_66 (Length: 369)
Name: NF2519_high_66
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_66 |
 | |
|
| [»] scaffold0178 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 44512459 - 44512108
Alignment:
| Q |
1 |
taatataacttggacttatactattctaatgggcctatcttaaatcattacggattcc--atgtttaaacccagtgtgtcaacttacgagattaaaatgg |
98 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||| |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
44512459 |
taatataacttggacttataatattctaatggacctatcttgaatcattacagattccctatgtttgaaccgagtgtgtcaacttacgagattaaaatgg |
44512360 |
T |
|
| Q |
99 |
tcatgagttttttcatcggatcaacctcagagattttggattaaaatgctcaattgttctaatttggaagaagcaactactttatgtgattaatcaagga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44512359 |
tcatgagttttttcatcggatcaacctcagagattttggattaaaatgctaaattgttctaatttggaagaagcaactactttatgtgattaatcaagga |
44512260 |
T |
|
| Q |
199 |
agcgtgatggtgaagacgttgattagtagaagnnnnnnnntaaatcaaatctaatatgaagggttcatctacatgttccaatatttatgtacagagtacc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44512259 |
agcgtgatggtgaagacgttgattagtagaagaaaaaaa--aaatcaaatctaatatgaagggttcatctacatgttccaatatttatgtacagagtacc |
44512162 |
T |
|
| Q |
299 |
tcattatcactagaaatcataatgaatatcagggtttggctctaacaacataag |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44512161 |
tcattatcactagaaatcataatgaatatcaggatttggctctaacaacataag |
44512108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6710 - 6760
Alignment:
| Q |
1 |
taatataacttggacttatactattctaatgggcctatcttaaatcattac |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
6710 |
taatataacttggacttatactattctaatggatctatcttagatcattac |
6760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6142 - 6092
Alignment:
| Q |
1 |
taatataacttggacttatactattctaatgggcctatcttaaatcattac |
51 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||||| || ||||| |
|
|
| T |
6142 |
taatataacttgaacttatactattctaataggcctttcttagattattac |
6092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42022794 - 42022744
Alignment:
| Q |
1 |
taatataacttggacttatactattctaatgggcctatcttaaatcattac |
51 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
42022794 |
taatataacttgaacttatactattctaatggacctatcttagatcattac |
42022744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41364624 - 41364575
Alignment:
| Q |
1 |
taatataacttggacttatactattctaatgggcctatcttaaatcatta |
50 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
41364624 |
taatataacttggacttacactattctaatgggcctatcatagatcatta |
41364575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 668077 - 668124
Alignment:
| Q |
4 |
tataacttggacttatactattctaatgggcctatcttaaatcattac |
51 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| ||| |||| |
|
|
| T |
668077 |
tataacttggacttatattattataatgggcctatcttagatcgttac |
668124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University