View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_high_71 (Length: 354)
Name: NF2519_high_71
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_71 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 33343631 - 33343959
Alignment:
| Q |
1 |
tctcctatgtttgtttggtagaaagaaaaatctaattgaa-aaacggcatgtgagcctcacatgccaatcaatggtacatttcattggtatttgtattgt |
99 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343631 |
tctcctatatttgtttggtagaaagaaaaatcaatttgatgaaacggcatgtgagcttcacatgccaatcaatggtacatttcattggtatttgtattgt |
33343730 |
T |
|
| Q |
100 |
atcgcaaaagtagggatatttaatactataatgcgacaatactgtagtcaacatgatgttatacctctatctcgtctagaaattcagtccaaataaactg |
199 |
Q |
| |
|
|||| ||||||||||||||| ||| || |||||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343731 |
atcgtaaaagtagggatattaaat--------gcaacaatagtgtagtcaacatgttgttctacttctatctcgtctagaaattcagtccaaataaactg |
33343822 |
T |
|
| Q |
200 |
aattctctatattttatagtaactgagaataagttagatcttatttcagtgtcccgcagaaccccattttgttccttcttgtctatgttcttgttgagaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343823 |
aattctctatattttatagtaactgagaataagttagatcttatttcagtatcccgcagaaccccattttgttccttcttgtctatgttcttgttgagaa |
33343922 |
T |
|
| Q |
300 |
ctttcatagagtagcttataacaataaatgaattact |
336 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33343923 |
ctttcatagagtagcttataaaaataaatgaattact |
33343959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University