View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_8 (Length: 604)
Name: NF2519_high_8
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 15 - 587
Target Start/End: Complemental strand, 33115141 - 33114560
Alignment:
| Q |
15 |
atgaatgttatgttgctatgaaactgtgacacctacacgagacatggcactaacacttcaacgccgttgatagtttgnnnnnnntggaaatttgaaggtt |
114 |
Q |
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| T |
33115141 |
atgaatgttatgttgctatgaaactgtgacacctacacgagacatggcactaacacttcaacgccgatgatagtttgaaaaaaatggaaatttgaaggtt |
33115042 |
T |
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| Q |
115 |
ggtgctacataggtaatttcatcaagggtgctaccatgtgcccttgccataagggcacatgttaaggtacttgaatgtagaaattttgcattgaaaagag |
214 |
Q |
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| T |
33115041 |
ggtgctacataggtaatttcatcaagggtgctaccatgtgcccttgccataagggcacatgttaaggtacttgaatgtagaaattttgcattgaaaagag |
33114942 |
T |
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| Q |
215 |
cagcttttggacatttaagaaattgatcacacaactgtagnnnnnnnnnngttttgaaggataatgtatgtagtttcttaacattaagggcacatgttag |
314 |
Q |
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| T |
33114941 |
cagcttttggacatttaagaaattgattacacaactgtagtttttttt---tttttaaggataatgtatgtagtttcttaacattaagggcacatgttag |
33114845 |
T |
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| Q |
315 |
tttcatcaaatgagattattannnnnnnnngaaaattgctgctgatacatcctttattgt------------actttatttgagttcatcaattagtcaa |
402 |
Q |
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| T |
33114844 |
tttcatcaaatgagattattatttttttttgaaaattgctgctgatacatcctttattgtactctttgatggactttatttgagttcatcaattagtcaa |
33114745 |
T |
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| Q |
403 |
tgactaccacaaaatgtattgagtaaatttttatcaaataatagatagtgtatcagaaaaaatgttataaagtgtgttgctagcgttcttcttttgatat |
502 |
Q |
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| T |
33114744 |
tgactaccacaaaatgtattgagtaaatttttatcaaataatagatagtgtatcagaaaaaatgttataaagtgtgttgctagtgttcttcttttgatgt |
33114645 |
T |
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| Q |
503 |
ttgcaggaattgcattgtatgcaagtatcaccattgttagttctttgttttgtttttatctttatttgataatgaatattgctgc |
587 |
Q |
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| T |
33114644 |
ttgcaggaattgcattgtatgcaagtatcaccattgttagttctttgttttgtttttatctttatttgataatgaatattgctgc |
33114560 |
T |
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