View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_80 (Length: 335)
Name: NF2519_high_80
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_80 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 52325251 - 52325044
Alignment:
| Q |
19 |
cttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctag |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52325251 |
cttgaatggctttttcttctgcatcgccatatgttccttcagatttcatatgggcaatgcaattttctgacacctttctcacatattcactaccttctag |
52325152 |
T |
|
| Q |
119 |
tgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccaaaaataagtgagtacatacatttacacacatgctactaactataat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52325151 |
tgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccataaataagtgagtatatacatttacacacatgctactaactataat |
52325052 |
T |
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| Q |
219 |
tcattgct |
226 |
Q |
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|||||||| |
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| T |
52325051 |
tcattgct |
52325044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 52329681 - 52329515
Alignment:
| Q |
19 |
cttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctag |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52329681 |
cttgaatggctttttcttctgcatcgccatatgttccttcaaatttcatatgggcaatgcaattttctgacacctttctcacatattcactaccttctag |
52329582 |
T |
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| Q |
119 |
tgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccaaaaataagtgagt |
185 |
Q |
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| T |
52329581 |
tgttctcacctttgtacatcgaataaacttctcaaagggacctaaacacacccataaataaatgagt |
52329515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 52332889 - 52332795
Alignment:
| Q |
47 |
atatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaa |
141 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52332889 |
atatgttccttcagatttcatatgggcaatgcaattttctgacacctttctcacatattcactaccgtctagtgttctcacctttgtacttcgaa |
52332795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 52324903 - 52324856
Alignment:
| Q |
278 |
atgattaggggcatatgatcattatggagtagtatgttgctacctttg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52324903 |
atgattaggggcatatgatcattatggagtagtatgttgctacctttg |
52324856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 52322108 - 52321994
Alignment:
| Q |
48 |
tatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatt |
147 |
Q |
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|||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||| || | ||| | | |||| | |||||| |||| |
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| T |
52322108 |
tatgttccatcagatttcatataagcaatacaattttctgacaccttcctcacatattcacgaccgtccaaagtttttaactttccccctcgaatcaatt |
52322009 |
T |
|
| Q |
148 |
tctcaaagggaccta |
162 |
Q |
| |
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||||||||||||||| |
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| T |
52322008 |
tctcaaagggaccta |
52321994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 9179378 - 9179216
Alignment:
| Q |
19 |
cttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9179378 |
cttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgggcaatgcaattttctgatacctttctcacatattcactaccttctag |
9179279 |
T |
|
| Q |
119 |
tgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccaaaaataagtgagtacata |
190 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||| || |||| | ||| ||||||||||| |
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| T |
9179278 |
tgttc---------tacttcgaataaatttctcaaagagacctaaacactcccatagatacgtgagtacata |
9179216 |
T |
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