View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_high_82 (Length: 334)

Name: NF2519_high_82
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_high_82
NF2519_high_82
[»] chr2 (4 HSPs)
chr2 (13-142)||(26029959-26030088)
chr2 (178-274)||(26030119-26030215)
chr2 (179-267)||(26026112-26026200)
chr2 (274-312)||(38693485-38693523)
[»] chr7 (3 HSPs)
chr7 (178-264)||(35379308-35379394)
chr7 (178-267)||(35380590-35380679)
chr7 (179-266)||(1271093-1271180)
[»] chr8 (2 HSPs)
chr8 (178-267)||(15883808-15883897)
chr8 (187-237)||(15884368-15884418)
[»] chr3 (4 HSPs)
chr3 (185-276)||(41741286-41741377)
chr3 (191-267)||(41740398-41740474)
chr3 (13-83)||(41741086-41741156)
chr3 (201-260)||(43157289-43157348)
[»] chr1 (7 HSPs)
chr1 (13-84)||(47511192-47511263)
chr1 (191-278)||(47510481-47510568)
chr1 (185-264)||(47512233-47512312)
chr1 (272-307)||(12289861-12289896)
chr1 (272-309)||(10390811-10390848)
chr1 (273-302)||(48229592-48229621)
chr1 (272-312)||(47308886-47308926)
[»] chr4 (2 HSPs)
chr4 (275-312)||(3001607-3001644)
chr4 (227-267)||(39095884-39095924)
[»] chr6 (1 HSPs)
chr6 (273-311)||(1769643-1769681)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 26029959 - 26030088
Alignment:
Q  13 gagcacagaggtgagtaatcacagaaattgggatatggtgaccaccattttcttagattgagagtggagacctctaaaaggaagttgaagaattgtggtg 112  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26029959 gagcacataggtgagtaatcacagaaattgagatatggtgaccaccattttcttagattgagagtggagacctctaaaaggaagttgaagaatcgtggtg 26030058  T
Q  113 ttgaagaatcccgcccaattagtgcagaag 142  Q
    ||||||||||||||||||||||||||||||    
T  26030059 ttgaagaatcccgcccaattagtgcagaag 26030088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 26030119 - 26030215
Alignment:
Q  178 gtctttgaatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatccgaatccgaa 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  26030119 gtcttttaatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagataattctgaaggagaggatccgattccgaa 26030215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 26026200 - 26026112
Alignment:
Q  179 tctttgaatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatccga 267  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26026200 tcttttaatatatccaccatctgattgatccaatggccaaaaattagtgaaggagagagatggagagaattctgaaggagaggatccga 26026112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 38693485 - 38693523
Alignment:
Q  274 aaaaatgttacatcaaaacacaatattttttatataagg 312  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  38693485 aaaaatgttagaccaaaacacaatattttttatataagg 38693523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 35379394 - 35379308
Alignment:
Q  178 gtctttgaatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatc 264  Q
    |||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||    
T  35379394 gtcttttaatatatccaccatctgattgatctaatggccaaaaattagtgaaggagagagatggaaagaattttgaaggagaggatc 35379308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 35380590 - 35380679
Alignment:
Q  178 gtctttgaatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatccga 267  Q
    |||||| |||||||| | |||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  35380590 gtcttttaatatatctatcatctgattgatccaatggctagaaattagtgaaggaaagagattgagagaattctgaaggagaggatccga 35380679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 1271180 - 1271093
Alignment:
Q  179 tctttgaatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatccg 266  Q
    ||||| ||||| |||||||| ||||||||||| |||| || ||| | ||||||||||||||||||||||||  |||||||||||||||    
T  1271180 tcttttaatatttccaccatttgattgatccagtggctaggaataaatgaaggagagagatggagagaattccgaaggagaggatccg 1271093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 15883897 - 15883808
Alignment:
Q  178 gtctttgaatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatccga 267  Q
    |||||| ||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  15883897 gtcttttaatatttccaccatctgattgatccaatggccaaaatgtagtgaaggagagagatggagagaattctgaaggagaggatccga 15883808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 15884368 - 15884418
Alignment:
Q  187 tatatccaccatctgattgatccaatggccagaaattagtgaaggagagag 237  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  15884368 tatatctaccttctgattgatccaatggccataaattagtgaaggagagag 15884418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 41741286 - 41741377
Alignment:
Q  185 aatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatccgaatccgaaaa 276  Q
    ||||| |||||||| |||||||||||||||| || |||   |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  41741286 aatatttccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccgattccgaaaa 41741377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 41740474 - 41740398
Alignment:
Q  191 tccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatccga 267  Q
    |||||||| |||||||||||||||| || |||   |||||||||||||||||||||||| |||||||||||||||||    
T  41740474 tccaccatttgattgatccaatggctaggaatggatgaaggagagagatggagagaattttgaaggagaggatccga 41740398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 41741086 - 41741156
Alignment:
Q  13 gagcacagaggtgagtaatcacagaaattgggatatggtgaccaccattttcttagattgagagtggagac 83  Q
    ||||| ||||||||| ||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  41741086 gagcatagaggtgagcaatcatagaaattgagatattgtgaccaccattttcttaggttgagagtggagac 41741156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 43157289 - 43157348
Alignment:
Q  201 gattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagag 260  Q
    ||||||||||||||| | ||||||||||||||| ||||  ||||||||| ||||||||||    
T  43157289 gattgatccaatggctataaattagtgaaggagggagaatgagagaattttgaaggagag 43157348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 47511192 - 47511263
Alignment:
Q  13 gagcacagaggtgagtaatcacagaaattgggatatggtgaccaccattttcttagattgagagtggagacc 84  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||    
T  47511192 gagcacagaggtgagcaatcatagaaattgagatattgtgaccaccattttcttaggttgagagtggagacc 47511263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 47510568 - 47510481
Alignment:
Q  191 tccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatccgaatccgaaaaaa 278  Q
    |||||||| |||||||||||||||| || |||   ||||| |||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  47510568 tccaccatttgattgatccaatggctaggaatggatgaagcagagagatggagagaattctgaaggagaggatccgattccaaaaaaa 47510481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 47512233 - 47512312
Alignment:
Q  185 aatatatccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagagaattatgaaggagaggatc 264  Q
    ||||| |||||||| | |||||||||||||| || |||   |||||||||||||||||||||||| ||||||||||||||    
T  47512233 aatatttccaccattttattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatc 47512312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 12289861 - 12289896
Alignment:
Q  272 gaaaaaatgttacatcaaaacacaatattttttata 307  Q
    ||||||||||||||||||||||||||||||||||||    
T  12289861 gaaaaaatgttacatcaaaacacaatattttttata 12289896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 10390848 - 10390811
Alignment:
Q  272 gaaaaaatgttacatcaaaacacaatattttttatata 309  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10390848 gaaaaaatgttacaacaaaacacaatattttttatata 10390811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 302
Target Start/End: Complemental strand, 48229621 - 48229592
Alignment:
Q  273 aaaaaatgttacatcaaaacacaatatttt 302  Q
    ||||||||||||||||||||||||||||||    
T  48229621 aaaaaatgttacatcaaaacacaatatttt 48229592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 47308886 - 47308926
Alignment:
Q  272 gaaaaaatgttacatcaaaacacaatattttttatataagg 312  Q
    |||| |||||||||  |||||||||||||||||||||||||    
T  47308886 gaaacaatgttacacaaaaacacaatattttttatataagg 47308926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 3001607 - 3001644
Alignment:
Q  275 aaaatgttacatcaaaacacaatattttttatataagg 312  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3001607 aaaatgttacatcaaaacacaatattttttatataagg 3001644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 39095924 - 39095884
Alignment:
Q  227 gaaggagagagatggagagaattatgaaggagaggatccga 267  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  39095924 gaaggagagagaaggagacaattttgaaggagaggatccga 39095884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 1769681 - 1769643
Alignment:
Q  273 aaaaaatgttacatcaaaacacaatattttttatataag 311  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  1769681 aaaaaatgttacattagaacacaatattttttatataag 1769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University