View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_high_83 (Length: 334)

Name: NF2519_high_83
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_high_83
NF2519_high_83
[»] chr5 (4 HSPs)
chr5 (31-304)||(39062405-39062677)
chr5 (305-334)||(8787496-8787525)
chr5 (305-334)||(34650833-34650862)
chr5 (305-333)||(35132679-35132707)
[»] chr8 (5 HSPs)
chr8 (302-334)||(34228839-34228871)
chr8 (303-334)||(9934570-9934601)
chr8 (303-333)||(16394059-16394089)
chr8 (304-333)||(16888543-16888572)
chr8 (305-333)||(168624-168652)
[»] chr3 (4 HSPs)
chr3 (302-334)||(10617281-10617313)
chr3 (304-334)||(272377-272407)
chr3 (305-334)||(43787028-43787057)
chr3 (305-334)||(52520838-52520867)
[»] chr2 (3 HSPs)
chr2 (303-334)||(30486367-30486398)
chr2 (303-333)||(32360867-32360897)
chr2 (305-334)||(20553088-20553117)
[»] chr7 (3 HSPs)
chr7 (304-334)||(24438634-24438664)
chr7 (305-334)||(34333440-34333469)
chr7 (302-334)||(24798400-24798432)
[»] chr4 (5 HSPs)
chr4 (292-334)||(4268809-4268851)
chr4 (305-334)||(7769095-7769124)
chr4 (305-334)||(16536205-16536234)
chr4 (305-334)||(16821009-16821038)
chr4 (305-334)||(29591346-29591375)
[»] scaffold0188 (1 HSPs)
scaffold0188 (305-334)||(6110-6139)
[»] chr6 (2 HSPs)
chr6 (305-334)||(392253-392282)
chr6 (305-334)||(32929508-32929537)
[»] chr1 (4 HSPs)
chr1 (305-334)||(18043319-18043348)
chr1 (305-334)||(29210551-29210580)
chr1 (302-334)||(24178460-24178492)
chr1 (306-334)||(38163007-38163035)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 31 - 304
Target Start/End: Original strand, 39062405 - 39062677
Alignment:
Q  31 cttctaaatttttgtctcgatttcaattttcaggtattatgaataattaagctaagtgtgttttatgaataattaattaatttccttctcatgcaaactt 130  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39062405 cttctaaatttttgtcgctatttcaattttcaggtattatgaataattaagctaagtgtgttttatgaataattaattaatttccttctcatgcaaactt 39062504  T
Q  131 atgttttgtaacaagaggaactatataatatgacaattatatccgtcaaataagatgacctaaatttaaggtgtttgatttacttatcaaaagggaaagt 230  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39062505 atgtttcgtaaca-gaggaactatataatatgacaattatatccgtcaaataagatgacctaaatttaaggtgtttgatttacttatcaaaagggaaagt 39062603  T
Q  231 gatcaaaatttcttcaaagataaatttagctctccgccaaactagaggatttgtaggggagataatatttcttt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39062604 gatcaaaatttcttcaaagataaatttagctctccgccaaactagaggatctgtaggggagataatatttcttt 39062677  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 8787525 - 8787496
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  8787525 gggtcctgctaaccggtgcccccggggcac 8787496  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 34650833 - 34650862
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  34650833 gggtcctgctaaccggtgcccccggggcac 34650862  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 35132707 - 35132679
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggca 333  Q
    |||||||||||||||||||||||||||||    
T  35132707 gggtcctgctaaccggtgcccccggggca 35132679  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 34228871 - 34228839
Alignment:
Q  302 tttgggtcctgctaaccggtgcccccggggcac 334  Q
    |||||||||||||||||||||||||||||||||    
T  34228871 tttgggtcctgctaaccggtgcccccggggcac 34228839  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 303 - 334
Target Start/End: Complemental strand, 9934601 - 9934570
Alignment:
Q  303 ttgggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||||    
T  9934601 ttgggtcctgctaaccggtgcccccggggcac 9934570  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Original strand, 16394059 - 16394089
Alignment:
Q  303 ttgggtcctgctaaccggtgcccccggggca 333  Q
    |||||||||||||||||||||||||||||||    
T  16394059 ttgggtcctgctaaccggtgcccccggggca 16394089  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 16888543 - 16888572
Alignment:
Q  304 tgggtcctgctaaccggtgcccccggggca 333  Q
    ||||||||||||||||||||||||||||||    
T  16888543 tgggtcctgctaaccggtgcccccggggca 16888572  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 168652 - 168624
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggca 333  Q
    |||||||||||||||||||||||||||||    
T  168652 gggtcctgctaaccggtgcccccggggca 168624  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 10617281 - 10617313
Alignment:
Q  302 tttgggtcctgctaaccggtgcccccggggcac 334  Q
    |||||||||||||||||||||||||||||||||    
T  10617281 tttgggtcctgctaaccggtgcccccggggcac 10617313  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 272407 - 272377
Alignment:
Q  304 tgggtcctgctaaccggtgcccccggggcac 334  Q
    |||||||||||||||||||||||||||||||    
T  272407 tgggtcctgctaaccggtgcccccggggcac 272377  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 43787057 - 43787028
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  43787057 gggtcctgctaaccggtgcccccggggcac 43787028  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 52520867 - 52520838
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  52520867 gggtcctgctaaccggtgcccccggggcac 52520838  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 303 - 334
Target Start/End: Complemental strand, 30486398 - 30486367
Alignment:
Q  303 ttgggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||||    
T  30486398 ttgggtcctgctaaccggtgcccccggggcac 30486367  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Original strand, 32360867 - 32360897
Alignment:
Q  303 ttgggtcctgctaaccggtgcccccggggca 333  Q
    |||||||||||||||||||||||||||||||    
T  32360867 ttgggtcctgctaaccggtgcccccggggca 32360897  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 20553117 - 20553088
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  20553117 gggtcctgctaaccggtgcccccggggcac 20553088  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 24438664 - 24438634
Alignment:
Q  304 tgggtcctgctaaccggtgcccccggggcac 334  Q
    |||||||||||||||||||||||||||||||    
T  24438664 tgggtcctgctaaccggtgcccccggggcac 24438634  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 34333469 - 34333440
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  34333469 gggtcctgctaaccggtgcccccggggcac 34333440  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 24798400 - 24798432
Alignment:
Q  302 tttgggtcctgctaaccggtgcccccggggcac 334  Q
    |||||||||||||||| ||||||||||||||||    
T  24798400 tttgggtcctgctaactggtgcccccggggcac 24798432  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 4268809 - 4268851
Alignment:
Q  292 ataatatttctttgggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||| | |||||||||||||||||||||| ||||||||    
T  4268809 ataatatttttatgggtcctgctaaccggtgccctcggggcac 4268851  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 7769124 - 7769095
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  7769124 gggtcctgctaaccggtgcccccggggcac 7769095  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 16536234 - 16536205
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  16536234 gggtcctgctaaccggtgcccccggggcac 16536205  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 16821038 - 16821009
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  16821038 gggtcctgctaaccggtgcccccggggcac 16821009  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 29591375 - 29591346
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  29591375 gggtcctgctaaccggtgcccccggggcac 29591346  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 6110 - 6139
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  6110 gggtcctgctaaccggtgcccccggggcac 6139  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 392282 - 392253
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  392282 gggtcctgctaaccggtgcccccggggcac 392253  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 32929508 - 32929537
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  32929508 gggtcctgctaaccggtgcccccggggcac 32929537  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 18043348 - 18043319
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  18043348 gggtcctgctaaccggtgcccccggggcac 18043319  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 29210580 - 29210551
Alignment:
Q  305 gggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||||||||||||||||||||||||    
T  29210580 gggtcctgctaaccggtgcccccggggcac 29210551  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 24178460 - 24178492
Alignment:
Q  302 tttgggtcctgctaaccggtgcccccggggcac 334  Q
    ||||||||| |||||||||||||||||||||||    
T  24178460 tttgggtccggctaaccggtgcccccggggcac 24178492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Complemental strand, 38163035 - 38163007
Alignment:
Q  306 ggtcctgctaaccggtgcccccggggcac 334  Q
    |||||||||||||||||||||||||||||    
T  38163035 ggtcctgctaaccggtgcccccggggcac 38163007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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