View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_high_84 (Length: 331)
Name: NF2519_high_84
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_84 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 6581340 - 6581018
Alignment:
| Q |
1 |
catctgtttttgcataaatgaagttgttggacctgttgaaggaggtagagcgcccacaaaaatcaagacagacgtgaagaaacctattgttaatcttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6581340 |
catctgtttttgcataaatgaagttgttggaactgttgaaggcggtagagcacccacaaaaatcaagacagacttgaagaagcctattgttaatcttgct |
6581241 |
T |
|
| Q |
101 |
tgtcatcctcgccttcctgttctggtattacttaaatacttgtcataattctatttattggcaagttcatattatatgtatttctccataaaaaatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6581240 |
tgtcatcctcgccttcctgttctggtattacttaaatacttgtcataattctatttattggcaagttcatattatatgtatttctccataaaaaatatct |
6581141 |
T |
|
| Q |
201 |
agtcttcagtctttcttctaatgatgatatttcaatctcccttctctactttgttgctttgtgtcctagtatgttgcttatgcagatggtttgattcgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6581140 |
agtcttcagtctttcttctaatgatgatacttcaatctcccttctctactttgttgctttgtgtcctagtatgttgcttatgcagatggtttgattcgag |
6581041 |
T |
|
| Q |
301 |
catataacattcacacctatgct |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6581040 |
catataacattcacacctatgct |
6581018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 34238472 - 34238597
Alignment:
| Q |
2 |
atctgtttttgcataaatgaagttgttggacctgttgaaggaggtagagcgcccacaaaaatcaagacagacgtgaagaaacctattgttaatcttgctt |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||| ||| || |||| || |||||||| ||||| ||||||| |||| || |||||||||| |
|
|
| T |
34238472 |
atctgtttttctgtaaatgaagttgttggaacggttgaaggcggtcgaacgcctaccaaaatcaaaccagacctgaagaaggctatcgtaaatcttgctt |
34238571 |
T |
|
| Q |
102 |
gtcatcctcgccttcctgttctggta |
127 |
Q |
| |
|
|||||||||| || ||||| |||||| |
|
|
| T |
34238572 |
gtcatcctcgactccctgtactggta |
34238597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 34238709 - 34238764
Alignment:
| Q |
268 |
agtatgttgcttatgcagatggtttgattcgagcatataacattcacacctatgct |
323 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
34238709 |
agtatgttgcttatgcagaaggtttgattcgggcatataacattcatacctatgct |
34238764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University