View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_89 (Length: 321)
Name: NF2519_high_89
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_89 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 38527623 - 38527815
Alignment:
| Q |
18 |
accttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccgaacaataatgtcataagaggtaaaccca |
117 |
Q |
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| T |
38527623 |
accttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccgaacaataatgtcataagaggtaaaccca |
38527722 |
T |
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| Q |
118 |
aaccgtttccaatagcaccgatagtaccaacaatcattaataaaatgtcagtagaatctgcaaaagtgaatagtttgtgaaatggaactgtct |
210 |
Q |
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| T |
38527723 |
aaccgtttccaatagcaccgatagtaccaacaatcattaataaaatgtcagtagaatctgcaaaagtgaatagtttgtgaaatggaactgtct |
38527815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 38569065 - 38569228
Alignment:
| Q |
47 |
ggtgttactttggttactaccaaaactatcaatcatttgaccgaacaataatgtcataagaggtaaacccaaaccgtttccaatagcaccgatagtacca |
146 |
Q |
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| T |
38569065 |
ggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggtaaacccaaaccatttccaatagcaccaatagtacca |
38569164 |
T |
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| Q |
147 |
acaatcattaataaaatgtcagtagaatctgcaaaagtgaatagtttgtgaaatggaactgtct |
210 |
Q |
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| T |
38569165 |
acaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtct |
38569228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 38527882 - 38527914
Alignment:
| Q |
277 |
aatttttctctgacgttgttgcttcatcatgat |
309 |
Q |
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| T |
38527882 |
aatttttctctgacgttgttgcttcatcatgat |
38527914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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