View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_90 (Length: 318)
Name: NF2519_high_90
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 44 - 300
Target Start/End: Original strand, 2919840 - 2920097
Alignment:
| Q |
44 |
tgggttaacctgcaaagccacacaaaga--atgcaagtattataaagacaatacgtaagaagaaaactttttaaaagtattaggacttacacattcaggg |
141 |
Q |
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| T |
2919840 |
tgggctaacctgcacagtcacacaaagagaatgcaagtattataaagacaatacctaagaaggaaacattttaaaagtattag-acttacacattcaggg |
2919938 |
T |
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| Q |
142 |
cacatccagttgtcaagacgggagcttttaagtggtgacagtaaacacccggtgtggaacgaataagtgcatgttttacagctcagaagatttccgctct |
241 |
Q |
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| T |
2919939 |
cacatccagttgtcaagacgggagcttttaagtggtgacagtaaacactcggtgtggaacgaataagtgcatgttttacagctcctaagatttccgctct |
2920038 |
T |
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| Q |
242 |
ttccacaagcttggcatgaatcctttttctgttggaaaaggatagaaacatcataacaa |
300 |
Q |
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| T |
2920039 |
ttccacaagcttggcatgaatcctttttctattggaaaaggatagaaacatcataacaa |
2920097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 2964334 - 2964444
Alignment:
| Q |
193 |
gtgtggaacgaataagtgcatgttttacagctcagaagatttccgc-tctttccacaagcttggcatgaatcctttttctgt-tggaaaaggatagaaac |
290 |
Q |
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||||| || |||||||||||||||| |||||||||||||||| ||| | | |||||||||||| ||||||| ||||||| | || |||||||||||||| |
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| T |
2964334 |
gtgtgtaaagaataagtgcatgtttcacagctcagaagattttcgcttatatccacaagcttgacatgaatattttttctatatgaaaaaggatagaaac |
2964433 |
T |
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| Q |
291 |
atcataacaaa |
301 |
Q |
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| T |
2964434 |
atcataacaaa |
2964444 |
T |
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