View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_92 (Length: 316)
Name: NF2519_high_92
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_92 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: scaffold0059 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 293
Target Start/End: Complemental strand, 52420 - 52152
Alignment:
| Q |
26 |
tctcaccaatagaacattatcaagttgtgatgattcaacattgatcaatttcc-agaaccaatgatcttaccttttgttccattaccaaatatgacatag |
124 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
52420 |
tctcaccaatagaacattatcaagttgtgatggttcaacattgatcactttcccagaaccaaggatcttatcttttgttccattaccatatatgacatag |
52321 |
T |
|
| Q |
125 |
atgttggcacatagtttctcaatattgagaagatcgttgaaaccagtcatgtgtctagagcatccactgtcaaaataccatctttccctttagggtgatc |
224 |
Q |
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|||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52320 |
ctgttggcacaacatttctcaatattgaaaagatctttgaagccagtcatgtgtctagagcatccactgtcaaaataccatctttcccttgagggtgatc |
52221 |
T |
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| Q |
225 |
ttagagaaatgtgatccgttaagccaacattgacaatttttggtttccacaccttcttaacctttgtca |
293 |
Q |
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|||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
52220 |
ttagagaagtgtgatccattaagccaacattgacaattttgggtttccactccttcttaacctttgtca |
52152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 16215640 - 16215362
Alignment:
| Q |
18 |
gttagacatctcaccaatagaacattatcaagttgtgatgattcaacattgatcaattt-ccagaaccaatgatcttaccttttgttccattaccaaata |
116 |
Q |
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||||||| |||||||||||||||||||||||||| || || |||||||||||||||||| || ||||||| ||||||| ||||||| ||||| |||| || |
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| T |
16215640 |
gttagacctctcaccaatagaacattatcaagttttgttggttcaacattgatcaattttcctgaaccaaggatcttaacttttgtcccattcccaa-ta |
16215542 |
T |
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| Q |
117 |
tgacatagatgttggcacatagtttctcaatattgagaagatcgttgaaaccagtcatgtgtctagagcatccactgtcaaaataccatctttcccttta |
216 |
Q |
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| T |
16215541 |
taacataattgttggcatagaatttctcaaccttgagaagatctttgaagccagtcatatgtctagagcatccactgtcaaaataccatctttccctaga |
16215442 |
T |
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| Q |
217 |
gggtgatcttagagaaatgtgatccgttaagccaacattgacaatttttggtttccacaccttcttaacctttgtcacct |
296 |
Q |
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||||| | ||||||| |||||| || |||| || |||||| ||||||| |||||||| || ||||| ||||||||||||| |
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| T |
16215441 |
gggtgtttttagagagatgtgaaccattaatcctacattgtcaattttaggtttccatactttcttgacctttgtcacct |
16215362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 7594489 - 7594453
Alignment:
| Q |
167 |
ccagtcatgtgtctagagcatccactgtcaaaatacc |
203 |
Q |
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| T |
7594489 |
ccagtcatgtgtctagagcatccactgtcaaagtacc |
7594453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 19896423 - 19896276
Alignment:
| Q |
18 |
gttagacatctcaccaatagaacattatcaagttgtgatgattcaacattgatcaattt-ccagaaccaatgatcttaccttttgttccattaccaaata |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19896423 |
gttagacctctcaccaatagaacattatcaagttgtgatgattcaacattgatcaattttccagaaccaatgatcttaccttttgttccattaccaaata |
19896324 |
T |
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| Q |
117 |
tgacatagatgttggcacatagtttctcaatattgagaagatcgttga |
164 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19896323 |
tgatatagttgttggcacatagtttctcaatattgagaagatcgttga |
19896276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 294
Target Start/End: Original strand, 25802446 - 25802715
Alignment:
| Q |
26 |
tctcaccaatagaacattatcaagttgtgatgattcaacattgatcaa-tttccagaaccaatgatcttaccttttgttccattaccaaatatgacatag |
124 |
Q |
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||||||| ||| ||| |||||||||| || ||||||| ||||||||| ||||| ||||| | |||||| |||||||| ||||| ||||| || ||| || |
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| T |
25802446 |
tctcacccataaaactttatcaagttttggtgattcatcattgatcagctttcctgaaccgaggatcttcccttttgtgccatttccaaaaataacaaag |
25802545 |
T |
|
| Q |
125 |
atgttggcacatagtttctcaatattgagaagatcgttgaaaccagtcatgtgtctagagcatccactgtcaaaataccatctttccctttagggtgatc |
224 |
Q |
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|||||| || |||||||| ||||||||||| || || |||||||||||||||||| ||||||| |||||| |||||||||||||| ||| | ||| |
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| T |
25802546 |
ttgttggtgcaggatttctcaacattgagaagatatttaaatccagtcatgtgtctagagaatccactatcaaaaaaccatctttcccttgaggatcatc |
25802645 |
T |
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| Q |
225 |
ttagagaaatgtgatccgttaagccaacattgacaatttttggtttccacaccttcttaacctttgtcac |
294 |
Q |
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||||||||||||| || |||| ||||||||| |||||||||||||| || ||||| |||||| |||| |
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| T |
25802646 |
ctagagaaatgtgagccattaatccaacattgttaatttttggtttccttacattcttgacctttatcac |
25802715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 274
Target Start/End: Original strand, 23588392 - 23588577
Alignment:
| Q |
89 |
atcttaccttttgttccattaccaaatatgacatagatgttggcacatagtttctcaatattgagaagatcgttgaaaccagtcatgtgtctagagcatc |
188 |
Q |
| |
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|||||||||||||| ||||| ||||||| |||||| |||||| || |||||||| | |||||||| || || |||||||| ||||||||||||| |
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| T |
23588392 |
atcttaccttttgtcccatttccaaatacaacatagttgttggtgcaggatttctcaacgtcaagaagatctttaaatccagtcatatgtctagagcatc |
23588491 |
T |
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| Q |
189 |
cactgtcaaaataccatctttccctttagggtgatcttagagaaatgtgatccgttaagccaacattgacaatttttggtttccac |
274 |
Q |
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|| |||||||||||||||||||||| |||| ||||||||| |||||| || | || || |||||| |||| || ||||||||| |
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| T |
23588492 |
cattgtcaaaataccatctttccctagtaggtgttcttagagagatgtgagccatcaatcctacattgtcaatcttaggtttccac |
23588577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 18037142 - 18037038
Alignment:
| Q |
28 |
tcaccaatagaacattatcaagttgtgatgattcaacattgatcaa-tttccagaaccaatgatcttaccttttgttccattaccaaatatgacatagat |
126 |
Q |
| |
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||||| || |||| |||||||||| || ||||||| |||||||||| ||||| ||||||| | |||| |||||||||||||| |||||||||||| || | |
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| T |
18037142 |
tcacccattgaactttatcaagttttggtgattcatcattgatcaactttcctgaaccaagggtcttcccttttgttccatttccaaatatgacaaagtt |
18037043 |
T |
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| Q |
127 |
gttgg |
131 |
Q |
| |
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||||| |
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| T |
18037042 |
gttgg |
18037038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 18037004 - 18036897
Alignment:
| Q |
186 |
atccactgtcaaaataccatctttccctttagggtgatcttagagaaatgtgatccgttaagccaacattgacaatttttggtttccacaccttcttaac |
285 |
Q |
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|||||||||||||||||||| |||||||| | | ||||| ||||||||||||| || |||| || |||||| | | ||| |||||||| || ||||| || |
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| T |
18037004 |
atccactgtcaaaataccatttttcccttgaagatgatcctagagaaatgtgagccattaatcctacattgtctactttaggtttccatactttcttgac |
18036905 |
T |
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| Q |
286 |
ctttgtca |
293 |
Q |
| |
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|||||||| |
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| T |
18036904 |
ctttgtca |
18036897 |
T |
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