View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_93 (Length: 315)
Name: NF2519_high_93
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_93 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 46351813 - 46352042
Alignment:
| Q |
17 |
actaaggaacgaatctttgttcaatcttgctttatatttattttttcatttaagaaatacnnnnnnngttattattgttaaaagaaagaa------ggnn |
110 |
Q |
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| T |
46351813 |
actaaggaacgaatctttgttcaatcttgctttatatttattttttcatttaagaaatactttttttgttattattgttaaaagaaagaaaagaaagaaa |
46351912 |
T |
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| Q |
111 |
nnnnnngtccaattttaagtccttgttttacgtaccttatttgtgaagacatgcactgaaacacaagcactaagaaaaaataactaactctcaacatcta |
210 |
Q |
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| T |
46351913 |
aaaaaagtccaattttaagtccttgttttacgtaccttatttgtgaagacatgcactgaaacacaagcactaagaaaaaataactaactctcaacatcta |
46352012 |
T |
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| Q |
211 |
taaattcttgttccacaaatcacacattcc |
240 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
46352013 |
taaattcttgttccacaaatcacacattcc |
46352042 |
T |
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