View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_high_97 (Length: 308)
Name: NF2519_high_97
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_high_97 |
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Alignment Details
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 18079019 - 18079119
Alignment:
| Q |
17 |
ccaaaatggtgttgttgttgtcaacggacgatgaaggttctgttgaaactgatgacatggtagctaaggattctgatgaaaacaatgctgcacaagaggg |
116 |
Q |
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| T |
18079019 |
ccaaaatggtgttgctgttgtcgacggacgatgaaggttctgttgaagctgatgacatggcagctaaggattctgatgaaaacaatgctgcacaagaggg |
18079118 |
T |
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| Q |
117 |
t |
117 |
Q |
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| T |
18079119 |
t |
18079119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 18077140 - 18077214
Alignment:
| Q |
43 |
gacgatgaaggttctgttgaaactgatgacatggtagctaaggattctgatgaaaacaatgctgcacaagagggt |
117 |
Q |
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| T |
18077140 |
gacgatgaaggttccgttgaagctgatgacatggaagctaaggattctgatgaaaacaatgttgcacaagagggt |
18077214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 51478822 - 51478916
Alignment:
| Q |
196 |
gaaaagaattgggaaggtgctgacgtggaagaaagagggttttcttccggttgtgcgagaaagagggaaaggcctaagaagattaaatcgttgaa |
290 |
Q |
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| T |
51478822 |
gaaaacaattgggaaggtgctgacgtggaagaaggaggtttttcttctggttgtgtgagaaagagggaaaggcctaggaagattaaatcgttgaa |
51478916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 51478625 - 51478725
Alignment:
| Q |
17 |
ccaaaatggtgttgttgttgtcaacggacgatgaaggttctgttgaaactgatgacatggtagctaaggattctgatgaaaacaatgctgcacaagaggg |
116 |
Q |
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| T |
51478625 |
ccaaaacggtggtgttgttgtcgacggacgatgatggttctgttgaagctgatagcatggcagctaaggattctgatgaaaacaatgctgcacaagaggg |
51478724 |
T |
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| Q |
117 |
t |
117 |
Q |
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| T |
51478725 |
t |
51478725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 51474437 - 51474525
Alignment:
| Q |
29 |
tgttgttgtcaacggacgatgaaggttctgttgaaactgatgacatggtagctaaggattctgatgaaaacaatgctgcacaagagggt |
117 |
Q |
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| T |
51474437 |
tgttgttgtcatcggacgatgaaggttccgttgaagctgatgacatggcaactaagaattctgatgaaaacaatgttgcacaagagggt |
51474525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 51495765 - 51495825
Alignment:
| Q |
230 |
gagggttttcttccggttgtgcgagaaagagggaaaggcctaagaagattaaatcgttgaa |
290 |
Q |
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| T |
51495765 |
gagggttttcttctgttggtgtgagaaagagtgaaaggcctaggaagattaaatcgttgaa |
51495825 |
T |
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