View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_10 (Length: 602)

Name: NF2519_low_10
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_10
NF2519_low_10
[»] chr2 (13 HSPs)
chr2 (14-278)||(21562924-21563188)
chr2 (433-588)||(21563400-21563555)
chr2 (448-544)||(31640242-31640338)
chr2 (287-381)||(21563253-21563347)
chr2 (456-544)||(27009209-27009297)
chr2 (495-562)||(8090518-8090585)
chr2 (287-373)||(39715013-39715099)
chr2 (448-536)||(44735983-44736071)
chr2 (479-562)||(45131108-45131191)
chr2 (454-551)||(20948117-20948214)
chr2 (280-365)||(21213783-21213868)
chr2 (287-347)||(24191859-24191919)
chr2 (448-544)||(40638803-40638899)
[»] chr5 (14 HSPs)
chr5 (451-577)||(18967859-18967985)
chr5 (448-562)||(31706407-31706521)
chr5 (479-562)||(16610602-16610685)
chr5 (453-562)||(29651781-29651890)
chr5 (456-556)||(12831501-12831601)
chr5 (456-556)||(12863476-12863576)
chr5 (451-562)||(704497-704608)
chr5 (287-330)||(43241694-43241737)
chr5 (448-498)||(22922496-22922546)
chr5 (448-498)||(22924154-22924204)
chr5 (454-544)||(26778719-26778809)
chr5 (307-381)||(30109270-30109343)
chr5 (449-498)||(22923139-22923188)
chr5 (479-528)||(39059165-39059214)
[»] chr1 (13 HSPs)
chr1 (448-572)||(31069648-31069772)
chr1 (448-562)||(26260754-26260868)
chr1 (439-566)||(22583168-22583295)
chr1 (456-562)||(32160080-32160186)
chr1 (448-536)||(27568386-27568474)
chr1 (441-566)||(25530040-25530166)
chr1 (448-544)||(15259403-15259499)
chr1 (450-577)||(9484850-9484977)
chr1 (456-577)||(44675106-44675227)
chr1 (448-541)||(6723714-6723807)
chr1 (448-536)||(23997115-23997203)
chr1 (474-562)||(36098602-36098690)
chr1 (448-544)||(40708444-40708539)
[»] chr7 (7 HSPs)
chr7 (448-566)||(12092679-12092797)
chr7 (448-562)||(47543429-47543543)
chr7 (479-564)||(26569741-26569826)
chr7 (456-536)||(17116411-17116491)
chr7 (454-562)||(42017796-42017904)
chr7 (287-380)||(48771959-48772052)
chr7 (309-381)||(5668532-5668604)
[»] chr6 (4 HSPs)
chr6 (448-542)||(11324470-11324564)
chr6 (287-380)||(346552-346644)
chr6 (456-541)||(7155430-7155515)
chr6 (456-536)||(34714926-34715006)
[»] chr3 (10 HSPs)
chr3 (448-536)||(14788870-14788958)
chr3 (280-381)||(4844472-4844573)
chr3 (280-381)||(4870168-4870269)
chr3 (456-544)||(4741010-4741098)
chr3 (453-564)||(36803166-36803277)
chr3 (287-381)||(47454578-47454672)
chr3 (448-533)||(20017433-20017518)
chr3 (280-373)||(31510687-31510780)
chr3 (307-347)||(33861729-33861769)
chr3 (297-381)||(44743816-44743900)
[»] chr4 (9 HSPs)
chr4 (451-542)||(52577990-52578081)
chr4 (287-381)||(30938180-30938274)
chr4 (479-564)||(45680218-45680303)
chr4 (456-548)||(9831395-9831487)
chr4 (297-373)||(39509101-39509177)
chr4 (287-343)||(40285644-40285700)
chr4 (500-558)||(19846583-19846641)
chr4 (479-536)||(27270014-27270071)
chr4 (297-381)||(37274420-37274504)
[»] chr8 (4 HSPs)
chr8 (456-591)||(8462466-8462601)
chr8 (460-566)||(10183443-10183549)
chr8 (448-494)||(16345721-16345767)
chr8 (459-544)||(33282829-33282914)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 21562924 - 21563188
Alignment:
Q  14 caaaagcaagatataagaaattgaaggctttgttannnnnnngttttatttgcaaactataaagtccataaaatgtagaagagactagaaagtgagctag 113  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21562924 caaaagcaagatataagaaattgaaggctttgttatttttttgttttatttgcaaactataaagtccataaaatgtagaagaggctagaaagtgagctag 21563023  T
Q  114 tcaaaaggataataaaagaagtgatactatagtagtatatttatagtgacaaatttgttgtcatgatgagttttgatacatatttggaatcacaaacagt 213  Q
    |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21563024 tcaaaaggataataaaaagaatgatactatagtagcatatttatagtgacaaatttgttgtcatgatgagttttgatacatatttggaatcacagacagt 21563123  T
Q  214 ttggaattttcaatggtnnnnnnngtagtgtgcatatgtgcaatgaatattgaatagtcaaaagt 278  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  21563124 ttggaattttcaatggtaaaaaaagtagtgtgcatatgtgcaatgaatattgaatagtcaaaagt 21563188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 433 - 588
Target Start/End: Original strand, 21563400 - 21563555
Alignment:
Q  433 ggtcgctgttacatttggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggct 532  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||    
T  21563400 ggtcgctattacatttggtagacaagattaagtcactttcttttacgtggttgagggcaaaatttgtttctctttcattaaattatcatggatggtgact 21563499  T
Q  533 tagtacgtttactatgttgagcattggctagtagatatttgttttgttgctttgtt 588  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  21563500 tagtacgtttactatgctgagcattggctagtagatatttcttttcttgctttgtt 21563555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 448 - 544
Target Start/End: Original strand, 31640242 - 31640338
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttac 544  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||||||||  |||||||||  | ||||| |||||||||||||||||| |||||||    
T  31640242 tggtagataagattaagtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttac 31640338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 287 - 381
Target Start/End: Original strand, 21563253 - 21563347
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttcttc 381  Q
    ||||||| | ||||||||||| |||||||||||||||||| ||| ||||| |||||||| | | ||||||||||||| ||||||||| |||||||    
T  21563253 tggtattaacttgggatcttgaagtgtgcacctccttgagatctcatgattgattctcctcggtgctaatttaagtgagttaatttagcttcttc 21563347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 456 - 544
Target Start/End: Original strand, 27009209 - 27009297
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttac 544  Q
    ||||||||||| ||  |||||| ||| |||| ||||||||||| ||||||||| || ||||| ||||| |||||||||||| |||||||    
T  27009209 aagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgtttac 27009297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 8090518 - 8090585
Alignment:
Q  495 tttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagcattggcta 562  Q
    |||||||||||||| || ||||||||||| |||||||||||| ||||||| || ||  ||||||||||    
T  8090518 tttatttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggcta 8090585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 373
Target Start/End: Original strand, 39715013 - 39715099
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaattta 373  Q
    ||||||||| |||||| || ||||||||| |||||| ||||||| | | |||||||||||| || | |||||| ||||| |||||||    
T  39715013 tggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccccagcaccaatttaggtgggctaattta 39715099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 536
Target Start/End: Complemental strand, 44736071 - 44735983
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagt 536  Q
    |||| |||||||||||||| ||  |||||| |||||||| |||||| |||| | ||||||| || |||| |||||| | ||||||||||    
T  44736071 tggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagt 44735983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 562
Target Start/End: Complemental strand, 45131191 - 45131108
Alignment:
Q  479 gtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagcattggcta 562  Q
    |||||||| || ||||| |  ||||||||| || ||||||||||| |||||||||||| | ||||| ||| || ||||||||||    
T  45131191 gtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgctgggcattggcta 45131108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 551
Target Start/End: Original strand, 20948117 - 20948214
Alignment:
Q  454 acaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttg 551  Q
    ||||||||||||| ||| | ||| ||||||||| |||||| | |  ||||||||   | ||||| ||||| |||||||||||| ||||||| ||||||    
T  20948117 acaagattaagtcgcttgccttttcgtggttgaaggcgaagtattcttctcttcgcctcaattaccatgggtggtggcttagtccgtttaccatgttg 20948214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 21213783 - 21213868
Alignment:
Q  280 ggtctgctggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtggg 365  Q
    |||||| ||||||||  |||||| || ||||||||  |||||||||||||| | | |||||||||||| | || |||||| |||||    
T  21213783 ggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctccccggtgccaatttaggtggg 21213868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 24191859 - 24191919
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccc 347  Q
    ||||||||  |||||| ||  |||||||| |||||||||| ||| ||||||||||||||||    
T  24191859 tggtattggcttgggacctgagagtgtgctcctccttgagatctcatgatcgattctcccc 24191919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 544
Target Start/End: Complemental strand, 40638899 - 40638803
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttac 544  Q
    |||| ||||||||||| || ||| | ||||||||||||| |  ||| | |  ||||||||| || ||||| ||||| |||||||||||| |||||||    
T  40638899 tggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaattaccatgggtggtggcttagtccgtttac 40638803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 451 - 577
Target Start/End: Original strand, 18967859 - 18967985
Alignment:
Q  451 tagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgtt 550  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||| ||| |||||||||| ||||||||| | |||| |||| |    
T  18967859 tagacaagattaagtcactttcttttatgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccatttattatgct 18967958  T
Q  551 gagcattggctagtagatatttgtttt 577  Q
    | |||||||||||||| ||||| ||||    
T  18967959 gggcattggctagtagttatttctttt 18967985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 448 - 562
Target Start/End: Complemental strand, 31706521 - 31706407
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactat 547  Q
    |||| |||||||||||||| ||| ||||||||||||| | |||||| | ||||||||||||  | ||||| ||||| |||||||||||| ||||||| ||    
T  31706521 tggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaattaccatgggtggtggcttagtccgtttaccat 31706422  T
Q  548 gttgagcattggcta 562  Q
     ||| |||| |||||    
T  31706421 attgggcataggcta 31706407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 562
Target Start/End: Original strand, 16610602 - 16610685
Alignment:
Q  479 gtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagcattggcta 562  Q
    |||||||| | |||| ||| |||||||||| || ||||||||||| |||||||||||| ||||||| || ||  ||||||||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggcta 16610685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 562
Target Start/End: Complemental strand, 29651890 - 29651781
Alignment:
Q  453 gacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttga 552  Q
    |||||||||||||  ||| ||||| |||||||||  ||||| |   |||||||||   | ||||||||||| |||||||||||| ||||||| ||||||     
T  29651890 gacaagattaagttgcttgctttttcgtggttgaatgcgaagtacttttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatgttgg 29651791  T
Q  553 gcattggcta 562  Q
    |||| |||||    
T  29651790 gcataggcta 29651781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 556
Target Start/End: Complemental strand, 12831601 - 12831501
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagca 555  Q
    |||||||||||  | ||||||| |||||||| || ||||||||   | ||||| || |||| |||||| |||||||||||| |||| ||||||||| |||    
T  12831601 aagattaagtcgatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcactatgttgggca 12831502  T
Q  556 t 556  Q
    |    
T  12831501 t 12831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 556
Target Start/End: Complemental strand, 12863576 - 12863476
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagca 555  Q
    |||||||||||  | ||||||| |||||||| || ||||||||   | ||||| || |||| |||||| |||||||||||| |||| ||||||||| |||    
T  12863576 aagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcactatgttgggca 12863477  T
Q  556 t 556  Q
    |    
T  12863476 t 12863476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 704608 - 704497
Alignment:
Q  451 tagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgtt 550  Q
    |||| ||||||||||  ||| ||||| | ||||||| ||| || |||  || ||||||||| ||||||||||| ||||| |||||| ||||||| ||  |    
T  704608 tagataagattaagtttcttacttttgcttggttgaaggcaaagtttgcttttcttccattcaattatcatgggtggtgacttagtccgtttaccatact 704509  T
Q  551 gagcattggcta 562  Q
    | ||||||||||    
T  704508 gggcattggcta 704497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 43241737 - 43241694
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtct 330  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  43241737 tggtattgacttgggatcttggagtgtgcccttccttgaggtct 43241694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 498
Target Start/End: Complemental strand, 22922546 - 22922496
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaattta 498  Q
    ||||||| ||||||||||| ||| ||||||||||||||| ||| |||||||    
T  22922546 tggtagagaagattaagtctcttgcttttacgtggttgaaggcaaaattta 22922496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 498
Target Start/End: Complemental strand, 22924204 - 22924154
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaattta 498  Q
    ||||||| ||||||||||| |||  |||||||||||||| |||||||||||    
T  22924204 tggtagagaagattaagtctcttggttttacgtggttgaaggcgaaattta 22924154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 544
Target Start/End: Complemental strand, 26778809 - 26778719
Alignment:
Q  454 acaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttac 544  Q
    ||||||||||||| ||  | || | |||||||| || ||||||| |||||||| | || ||||||||||| |||||| ||||| |||||||    
T  26778809 acaagattaagtctctagcattcatgtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttac 26778719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 30109343 - 30109270
Alignment:
Q  307 ggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttcttc 381  Q
    ||||||||| |||||||||||||| | | ||||||| |||| | ||||||||| ||||| ||||||| |||||||    
T  30109343 ggagtgtgctcctccttgaggtctcaggttcgattc-ccccggtgctaatttaggtgggctaatttagcttcttc 30109270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 22923188 - 22923139
Alignment:
Q  449 ggtagacaagattaagtcactttcttttacgtggttgagggcgaaattta 498  Q
    |||||| ||||||||||| ||| ||||||||||||||| ||| |||||||    
T  22923188 ggtagagaagattaagtctcttgcttttacgtggttgaaggcaaaattta 22923139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 39059165 - 39059214
Alignment:
Q  479 gtggttgagggcgaaatttatttctcttccattaaattatcatggatggt 528  Q
    |||||||| || ||||||||| ||||||||||||||||  ||||||||||    
T  39059165 gtggttgaaggggaaatttatctctcttccattaaatttacatggatggt 39059214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 448 - 572
Target Start/End: Original strand, 31069648 - 31069772
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactat 547  Q
    |||||||||||||||||||| |||| || | |||||||| ||||||||||   |||||||||||||||||||||||||||| | ||| | ||||||||||    
T  31069648 tggtagacaagattaagtcattttccttcatgtggttgaaggcgaaatttgcctctcttccattaaattatcatggatggtagtttaatccgtttactat 31069747  T
Q  548 gttgagcattggctagtagatattt 572  Q
    ||||||||||| ||||||| |||||    
T  31069748 gttgagcattgactagtagttattt 31069772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 448 - 562
Target Start/End: Original strand, 26260754 - 26260868
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactat 547  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||| |||  ||||||||| || ||||||||||| |||||||||||| | ||||| ||    
T  26260754 tggtagacatgatcaagtctcttgcttttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccat 26260853  T
Q  548 gttgagcattggcta 562  Q
    |||| ||||||||||    
T  26260854 gttgggcattggcta 26260868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 566
Target Start/End: Complemental strand, 22583295 - 22583168
Alignment:
Q  439 tgttacatttggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtac 538  Q
    |||||||  ||||||| ||||| ||||||||||| || | |||||||| ||||||||||   |||||||| ||||| ||  || |||||||||||||| |    
T  22583295 tgttacaggtggtagataagatgaagtcactttccttcatgtggttgaaggcgaaatttgcctctcttcccttaaactagtatagatggtggcttagtcc 22583196  T
Q  539 gtttactatgttgagcattggctagtag 566  Q
     |||||||||||| ||||| ||||||||    
T  22583195 atttactatgttgggcatttgctagtag 22583168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 562
Target Start/End: Original strand, 32160080 - 32160186
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagca 555  Q
    ||||||||||| ||| ||||||||||||||||| |||| |||||||||||| | || ||||| ||| | |||||||||||| ||||||| || ||  |||    
T  32160080 aagattaagtcgcttgcttttacgtggttgaggacgaagtttatttctctttccttcaattaccattggtggtggcttagtccgtttaccattttaggca 32160179  T
Q  556 ttggcta 562  Q
    |||||||    
T  32160180 ttggcta 32160186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 448 - 536
Target Start/End: Original strand, 27568386 - 27568474
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagt 536  Q
    ||||||| | ||||||||| ||| ||||||||||||||| ||| |||||| |||||||||| || ||||| ||||| ||||||||||||    
T  27568386 tggtagaaacgattaagtctcttgcttttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagt 27568474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 441 - 566
Target Start/End: Original strand, 25530040 - 25530166
Alignment:
Q  441 ttacatttggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggc-ttagtacg 539  Q
    ||||| ||||| || |||||||||||||||||  ||  |||||||| ||||||||||   |||||||||||||||| |||||  ||||||| ||||| |     
T  25530040 ttacaattggtggataagattaagtcactttccattgtgtggttgaaggcgaaatttgcctctcttccattaaattttcatgagtggtggctttagtcca 25530139  T
Q  540 tttactatgttgagcattggctagtag 566  Q
    |||||| ||||| |||| |||||||||    
T  25530140 tttactttgttgggcatcggctagtag 25530166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 544
Target Start/End: Original strand, 15259403 - 15259499
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttac 544  Q
    |||| ||||||||||| || ||| ||||||||||||||| |||||| | ||||||||||||  | ||||| ||||| |||| ||||||| |||||||    
T  15259403 tggtcgacaagattaaatcgcttgcttttacgtggttgaaggcgaagtatatttctcttcccctcaattaccatgggtggtagcttagtccgtttac 15259499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 577
Target Start/End: Original strand, 9484850 - 9484977
Alignment:
Q  450 gtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgt 549  Q
    ||||| |||||||||||| |||| ||   |||||||| |||||||||| |||||||||| || ||||||||||| |||||| |||||  ||| || ||||    
T  9484850 gtagataagattaagtcaatttccttcttgtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtcagttcacaatgt 9484949  T
Q  550 tgagcattggctagtagatatttgtttt 577  Q
    || |||| | ||||| | ||||| ||||    
T  9484950 tgggcatcgactagttgttatttctttt 9484977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 577
Target Start/End: Original strand, 44675106 - 44675227
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagca 555  Q
    ||||||||| ||||| | || | |||||||| ||||||||||  ||| ||||| || ||||||||||| |||||||||||| ||||||  |||||| |||    
T  44675106 aagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatcatgttgggca 44675205  T
Q  556 ttggctagtagatatttgtttt 577  Q
    | | ||| ||| ||||| ||||    
T  44675206 tagactaatagttatttctttt 44675227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 541
Target Start/End: Complemental strand, 6723807 - 6723714
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtt 541  Q
    |||| |||||||||||||| ||  |||||| |||||||| || ||| |||| | ||| ||| || |||| ||||||||||||||||||| ||||    
T  6723807 tggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtccgtt 6723714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 536
Target Start/End: Original strand, 23997115 - 23997203
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagt 536  Q
    |||| ||||||||||||||| || | |||| |||||||| || |||| |  |||||||| | || ||||||||||| || |||||||||    
T  23997115 tggtggacaagattaagtcagttacctttaggtggttgaaggtgaaactcgtttctctttcctttaattatcatggctgatggcttagt 23997203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 562
Target Start/End: Complemental strand, 36098690 - 36098602
Alignment:
Q  474 tttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagcattggcta 562  Q
    |||| |||| ||| ||| ||||| ||| | ||||| || ||||||||||| |||||||||||| |||| || |||||| |||| |||||    
T  36098690 tttaggtggctgaaggcaaaattcattacacttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggcta 36098602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 544
Target Start/End: Complemental strand, 40708539 - 40708444
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttac 544  Q
    |||||||||| |||||||| ||  |||| | ||||||||||  ||||| | |||||||||| || ||||||||||   ||||||||||| |||||||    
T  40708539 tggtagacaaaattaagtctctgactttcatgtggttgaggt-gaaatatgtttctcttcccttcaattatcatgttcggtggcttagtccgtttac 40708444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 12092679 - 12092797
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactat 547  Q
    ||||||| ||||||||||||||||| || | |||||||| ||||||||||   |||||||| ||||| |||||||||| |||||||||| | ||||||||    
T  12092679 tggtagataagattaagtcactttccttcatgtggttgaaggcgaaattttcctctcttcccttaaactatcatggatagtggcttagtccatttactat 12092778  T
Q  548 gttgagcattggctagtag 566  Q
    |||| ||||| ||||||||    
T  12092779 gttgggcattagctagtag 12092797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 448 - 562
Target Start/End: Original strand, 47543429 - 47543543
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactat 547  Q
    |||| |||||||||||||| ||| ||||||||||||||| | |||| |||| ||||||||| || ||||||||||| || ||||||||| ||||||| ||    
T  47543429 tggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaattatcatgggtgatggcttagtccgtttaccat 47543528  T
Q  548 gttgagcattggcta 562  Q
     ||  ||||||||||    
T  47543529 tttaggcattggcta 47543543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 564
Target Start/End: Original strand, 26569741 - 26569826
Alignment:
Q  479 gtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagcattggctagt 564  Q
    |||||||| ||||||| ||  ||||||||| || ||||||||||||||||||||  || |||| ||||||||| ||||||||||||    
T  26569741 gtggttgaaggcgaaacttgcttctcttcccttcaattatcatggatggtggctatgtccgttcactatgttgggcattggctagt 26569826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 536
Target Start/End: Complemental strand, 17116491 - 17116411
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagt 536  Q
    ||||||||||||||  | |||| |||||||| |||||||| |  ||||||||| || | ||||||||| ||||||||||||    
T  17116491 aagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggttggtggcttagt 17116411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 562
Target Start/End: Original strand, 42017796 - 42017904
Alignment:
Q  454 acaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgag 553  Q
    ||||||||||||||||||| | || |||||||| ||||||| ||  |   ||  | || || ||||||||||||||||||||| |||| ||||||||| |    
T  42017796 acaagattaagtcactttcatatatgtggttgaaggcgaaacttcctaagctctctttcaactatcatggatggtggcttagtccgttcactatgttggg 42017895  T
Q  554 cattggcta 562  Q
    ||| |||||    
T  42017896 cataggcta 42017904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 380
Target Start/End: Original strand, 48771959 - 48772052
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttctt 380  Q
    ||||||||  ||||||||| ||||||||| |||||||||||||| | | |||||| ||||  |  | |||||| ||||| ||||||| ||||||    
T  48771959 tggtattggcttgggatctgggagtgtgctcctccttgaggtctcaggttcgattatcccaagtaccaatttaggtgggctaatttagcttctt 48772052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 5668604 - 5668532
Alignment:
Q  309 agtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttcttc 381  Q
    ||||||| |||||| ||||||| | ||||||||||| || | | ||||||| ||||| ||||||| |||||||    
T  5668604 agtgtgctcctcctcgaggtctcaggatcgattctctccggagttaatttatgtgggctaatttagcttcttc 5668532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 448 - 542
Target Start/End: Original strand, 11324470 - 11324564
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgttt 542  Q
    ||||||||||||||||||  ||| ||||||||||||||| ||||||||||  ||||||||| || ||||||||||| |||||||||||| |||||    
T  11324470 tggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtccgttt 11324564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 380
Target Start/End: Original strand, 346552 - 346644
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttctt 380  Q
    ||||||||| |||||| || |||||||||  ||||| ||||||| ||| ||||||||| |||| |  ||||||||| || ||||||||||||||    
T  346552 tggtattgacttgggacct-ggagtgtgcttctcctcgaggtctcatgttcgattctcacccgtgtcaatttaagtaggctaatttatcttctt 346644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 541
Target Start/End: Original strand, 7155430 - 7155515
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtt 541  Q
    ||||||||||  ||| ||||||||||||||| ||  ||||||  |||||| || || ||||||||| |||||||| ||||| ||||    
T  7155430 aagattaagtttcttacttttacgtggttgaaggaaaaattttcttctctacccttcaattatcatagatggtggtttagtccgtt 7155515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 536
Target Start/End: Original strand, 34714926 - 34715006
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagt 536  Q
    ||||||||||| ||  |||||| ||||||||  || ||||||| |||||||||  | ||||| ||||| ||||||||||||    
T  34714926 aagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggttggtggcttagt 34715006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 448 - 536
Target Start/End: Original strand, 14788870 - 14788958
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagt 536  Q
    ||||||| ||||||||||| ||| ||||||||||||||| |||||||||| |||||||||| |  ||||| ||||  ||||||||||||    
T  14788870 tggtagataagattaagtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagt 14788958  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 4844573 - 4844472
Alignment:
Q  280 ggtctgctggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttct 379  Q
    |||||| ||||||||| ||||||||| ||||||||| |||||| ||||||| | ||||||||||| || | || |||||  ||||| ||||||| |||||    
T  4844573 ggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttct 4844474  T
Q  380 tc 381  Q
    ||    
T  4844473 tc 4844472  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 4870269 - 4870168
Alignment:
Q  280 ggtctgctggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttct 379  Q
    |||||| ||||||||| ||||||||| ||||||||| |||||| ||||||| | ||||||||||| || | || |||||  ||||| ||||||| |||||    
T  4870269 ggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttct 4870170  T
Q  380 tc 381  Q
    ||    
T  4870169 tc 4870168  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 456 - 544
Target Start/End: Original strand, 4741010 - 4741098
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttac 544  Q
    ||||||||||| ||| ||||||||||||||| | |||| | |||||||||||| || ||||| ||||| || ||||||||| |||||||    
T  4741010 aagattaagtcgcttgcttttacgtggttgaagacgaagtatatttctcttcccttcaattaccatgggtgatggcttagtccgtttac 4741098  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 564
Target Start/End: Original strand, 36803166 - 36803277
Alignment:
Q  453 gacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttga 552  Q
    ||||||||||| || ||| |||||| |||||||| |||||| ||||   || |||| || |||| |||||  |||||||||||| |||| || |||||||    
T  36803166 gacaagattaaatcgcttacttttatgtggttgaaggcgaagtttaccactattcctttcaattttcatgcttggtggcttagtccgttcacaatgttga 36803265  T
Q  553 gcattggctagt 564  Q
    |||||| |||||    
T  36803266 gcattgactagt 36803277  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 47454672 - 47454578
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttcttc 381  Q
    ||||||||  ||| ||||||||||||||| |||||| ||||||| | | ||||||||||||   || |||||| |||||||| |||| |||||||    
T  47454672 tggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 47454578  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 20017518 - 20017433
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggctt 533  Q
    ||||||| ||||||||||| ||| ||| ||||||||||| |  ||||||| |||| ||||| ||||| || ||||| |||||||||    
T  20017518 tggtagaaaagattaagtctcttgcttatacgtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctt 20017433  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 31510780 - 31510687
Alignment:
Q  280 ggtctgctggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaattta 373  Q
    |||||| ||||||||| ||||||  | ||||| ||| ||||| |  ||||||| | |||||||||||| | ||||||||| ||||| |||||||    
T  31510780 ggtctggtggtattgacttgggacttgggagtatgctcctccatacggtctaaagttcgattctccccggtgctaatttaggtgggctaattta 31510687  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 33861769 - 33861729
Alignment:
Q  307 ggagtgtgcacctccttgaggtctaatgatcgattctcccc 347  Q
    ||||||||| |||||| ||||||||||| ||||||||||||    
T  33861769 ggagtgtgctcctcctcgaggtctaatgttcgattctcccc 33861729  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 44743900 - 44743816
Alignment:
Q  297 ttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttcttc 381  Q
    ||||||||| ||||||||| |||||| ||||||| | | |||||| || || | || |||||  ||||||||||||| |||||||    
T  44743900 ttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattatctccagtgccaatttgggtgggttaatttagcttcttc 44743816  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 451 - 542
Target Start/End: Original strand, 52577990 - 52578081
Alignment:
Q  451 tagacaagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgttt 542  Q
    |||| ||||||||||| ||| ||||||||||||||| || ||| ||| | |||||||| || ||||||||||| |||||||||||| |||||    
T  52577990 tagataagattaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagtgcgttt 52578081  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 30938274 - 30938180
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttcttc 381  Q
    |||||||| |||||||||||||||||||| |||||| ||||||| | | ||||||||||||   || |||||| |||||||| |||| |||||||    
T  30938274 tggtattggtttgggatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 30938180  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 564
Target Start/End: Complemental strand, 45680303 - 45680218
Alignment:
Q  479 gtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagcattggctagt 564  Q
    |||||||| ||||||| || | |||||||||||||||| |||||| |||||| ||||| |||| ||| ||||| ||||| ||||||    
T  45680303 gtggttgaaggcgaaaattgtctctcttccattaaattttcatgggtggtggtttagtccgttaactttgttgggcattagctagt 45680218  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 548
Target Start/End: Original strand, 9831395 - 9831487
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatg 548  Q
    ||||| ||||| ||| |||||| |||||||| |||||||||  || | ||||| || ||||||||||| |||||||||||| |||| ||||||    
T  9831395 aagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtccgttcactatg 9831487  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 39509101 - 39509177
Alignment:
Q  297 ttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaattta 373  Q
    ||||||||| ||||||||| |||||| ||||||| | | |||||||||||| | |  |||||| |||||||||||||    
T  39509101 ttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctccccagtggcaatttaggtgggttaattta 39509177  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 40285644 - 40285700
Alignment:
Q  287 tggtattgatttgggatcttggagtgtgcacctccttgaggtctaatgatcgattct 343  Q
    |||||||||||||| |||| ||||||||| |||| ||||||||||| | ||||||||    
T  40285644 tggtattgatttggaatctgggagtgtgctcctctttgaggtctaaagttcgattct 40285700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 19846583 - 19846641
Alignment:
Q  500 ttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagcattg 558  Q
    ||||||||| || ||||||||||| |||||| ||||| ||||||| |||||| ||||||    
T  19846583 ttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttgggcattg 19846641  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 536
Target Start/End: Complemental strand, 27270071 - 27270014
Alignment:
Q  479 gtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagt 536  Q
    |||||||| ||||||||||  ||| ||||| || ||||||||||| ||||||||||||    
T  27270071 gtggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagt 27270014  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 37274504 - 37274420
Alignment:
Q  297 ttgggatcttggagtgtgcacctccttgaggtctaatgatcgattctcccccgcgctaatttaagtgggttaatttatcttcttc 381  Q
    |||||| || ||||||||| ||||||  |||||| | | ||||||||| |  | ||||||||||||||| ||||||| |||||||    
T  37274504 ttgggacctgggagtgtgctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaatttagcttcttc 37274420  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 591
Target Start/End: Complemental strand, 8462601 - 8462466
Alignment:
Q  456 aagattaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagca 555  Q
    ||||||||||||||  | || | |||||||| ||||||||||  ||||||||| || ||||||||||| ||||||||||||  |||||| ||| ||| ||    
T  8462601 aagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgtttaccatgatgaaca 8462502  T
Q  556 ttggctagtagatatttgttttgttgctttgttcat 591  Q
    | ||||| | | ||||| |||| ||  |||||||||    
T  8462501 taggctaattgttatttcttttctttatttgttcat 8462466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 566
Target Start/End: Original strand, 10183443 - 10183549
Alignment:
Q  460 ttaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttactatgttgagcattgg 559  Q
    ||||||| ||||| || | |||||| | ||||||||||   ||| |||| ||||| ||| ||||||||||||||||| | |||||||||||| | |||||    
T  10183443 ttaagtctctttccttcatgtggttaaaggcgaaatttgcctcttttcccttaaactataatggatggtggcttagtccatttactatgttgggtattgg 10183542  T
Q  560 ctagtag 566  Q
    |||||||    
T  10183543 ctagtag 10183549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 16345767 - 16345721
Alignment:
Q  448 tggtagacaagattaagtcactttcttttacgtggttgagggcgaaa 494  Q
    |||| |||||||||||||| |||||||||| |||||||| |||||||    
T  16345767 tggttgacaagattaagtctctttcttttatgtggttgaaggcgaaa 16345721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 544
Target Start/End: Original strand, 33282829 - 33282914
Alignment:
Q  459 attaagtcactttcttttacgtggttgagggcgaaatttatttctcttccattaaattatcatggatggtggcttagtacgtttac 544  Q
    |||||||| ||| |||||| |||||||| ||  ||||||  |||||| ||  | ||||||||||| |||||||||||| |||||||    
T  33282829 attaagtcgcttacttttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgtttac 33282914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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