View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_103 (Length: 301)
Name: NF2519_low_103
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 99 - 292
Target Start/End: Complemental strand, 38030153 - 38029960
Alignment:
| Q |
99 |
gaaaaatctaaacaaaaaggtccataaagaaacaagattatattataactaacagcaagaaacaagattatatattatactaacatctaagccttctaaa |
198 |
Q |
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| T |
38030153 |
gaaaaatctaaacaaaaaggtccataaagaaacaagattatattataactaacagcaagaaacaagattatatattatactaacatctaagccttctaaa |
38030054 |
T |
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| Q |
199 |
cgcgtttgttccacaggccttcttgctgatcatcaccactcttcaagatcagttccttaatttccagcggaggtttctttttccactcctttgc |
292 |
Q |
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| T |
38030053 |
cgcgtttgttccataggccttcttgctgatcattaccactcttcaagatcagttccttaatttcctgcggaggattcatatcccacttctttgc |
38029960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 38024906 - 38024826
Alignment:
| Q |
18 |
gaaagaaactactaaacgatgcaaaaaa-caaacacacattttagatatatcaaatccaaaacacatatatagaaactgat |
97 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38024906 |
gaaagaaactactaaacgatgcaaaaaaacaaacacacattttagatatatcaaatccaaaacacatatatagaaactgat |
38024826 |
T |
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