View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_104 (Length: 300)
Name: NF2519_low_104
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_104 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 29120954 - 29121239
Alignment:
| Q |
15 |
agtttgatcaccaatttccaaaacatttttgtgtgagaaatattaaaaatgatgttagtattgtatttacttctccttgatgatttagtgataacaagta |
114 |
Q |
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| T |
29120954 |
agtttgatcaccaatttccaaaacatttgtgtgtgagaaatattaaaaatgatgttagtattgtatttacttctccttgatgatttagtgataacaagta |
29121053 |
T |
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| Q |
115 |
gtccaatataggttgagtttttgccaatttgccactaaaacgtgaagttaagaactttgaaacaaaatggagtccatttccaattgaagaaggcaatttt |
214 |
Q |
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| T |
29121054 |
gtccaatataggttgagtttttgccaatttgacactaaatcgtgaagttaagaactttgaaacaaaatggagtccatttccaattgaagaaggcaatttt |
29121153 |
T |
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| Q |
215 |
aagttaggaataggaaagtcaaatgctccaaaatctgtttcaagtgcattttcatcgtttgccctacaacataaacccaagttaac |
300 |
Q |
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| T |
29121154 |
aagttaggaataggaaagtcaaatgctccaaaatctgcttcaagtgcattttcatcgtttgccctacaacataaacccaagttaac |
29121239 |
T |
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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 282
Target Start/End: Complemental strand, 32774538 - 32774337
Alignment:
| Q |
81 |
ttacttctccttgatgatttagtgataacaagtagtccaatataggttgagtttttgccaatttgccactaaaacgtgaagttaagaactttgaaacaaa |
180 |
Q |
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| T |
32774538 |
ttacttctccatgatgatttagttttaacaagtagtccactatagtctgtgctttggccaatttcccagttgtccttgaagttaagaactttgaaacaaa |
32774439 |
T |
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| Q |
181 |
atggagtccatttccaattgaagaaggcaattttaagttaggaataggaaagtcaaatgctccaaaatctgtttcaagtgcattttcatcgtttgcccta |
280 |
Q |
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| T |
32774438 |
gtgtagtccatttccaattgaagaagacaaggttaatttaggaatcccaatatcaaatgctccaaagtctgcttcaaatgcattttcatcatttgcccta |
32774339 |
T |
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| Q |
281 |
ca |
282 |
Q |
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|| |
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| T |
32774338 |
ca |
32774337 |
T |
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