View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_109 (Length: 292)
Name: NF2519_low_109
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_109 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 26644846 - 26645048
Alignment:
| Q |
18 |
atgaaagacatatttaaaaatgttttcgtatcaataagagactattataataatgttttgcttattcaataaccaaaatgaccgttgcctcaaaatgaat |
117 |
Q |
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| T |
26644846 |
atgaaagccatatttaaaaatgtttttgtatcaataagagactattataacaatgttttgcttattcaataaccaaaatgactgtttcctcaaaatgaat |
26644945 |
T |
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| Q |
118 |
atcgt-acttcatttttgaagggaatattgttatttcatatctatagtagataatggtcaaaatatactatttagacatagagaaatgatatttgaacac |
216 |
Q |
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| T |
26644946 |
attgttacttcatttttgaagggaatattgttatttcatatctatagtagataatggtcaaaatttactatttagacatagagaaatgatatttgaacac |
26645045 |
T |
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| Q |
217 |
cta |
219 |
Q |
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||| |
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| T |
26645046 |
cta |
26645048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 26658724 - 26658789
Alignment:
| Q |
29 |
atttaaaaatgttttcgtatcaataagagactattataataatgttttgcttattcaataaccaaa |
94 |
Q |
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| T |
26658724 |
atttaaaaaagtctttgcatcaatcagagactattataacaatgttttgcatatttaataaacaaa |
26658789 |
T |
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