View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_11 (Length: 592)
Name: NF2519_low_11
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 40511633 - 40511954
Alignment:
| Q |
18 |
cgatcatcacggtggagtaccggagcagactgctgttgttgctccacgacctcagcaggtgaagaagagtcgtcgtggaccgaggtcacgaagctcgcag |
117 |
Q |
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| T |
40511633 |
cgatcatcacggtggagtaccggagcagactgctgttgttgcttcacgacctcagcaggtgaagaagagtcgtcgtggaccgaggtcacgaagctcgcag |
40511732 |
T |
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| Q |
118 |
tatcgtggtgttactttctaccggagaactggacgttgggaatctcatatttggttcgcatttcgcaatcgattattctgtttcttcgtagttcagttca |
217 |
Q |
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| T |
40511733 |
tatcgtggtgttactttctaccggagaactggacgttgggaatctcatatttggttcgcatttcgcaatcgattattctgtttcttcgtagttcagttta |
40511832 |
T |
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| Q |
218 |
ctttctgcatttcatgatagtgttgtttctgaatccactctgttttcgtttttctgcagggattgtggaaaacaagtatacttaggtgagaaatcattac |
317 |
Q |
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| T |
40511833 |
ctttctgcatttcatgatagtgttgtttctgaatccactctgttttcgtttttctgcagggattgtggaaaacaagtatacttaggtgagaaatcattac |
40511932 |
T |
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| Q |
318 |
tgattaagtgattatttgagac |
339 |
Q |
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| T |
40511933 |
tgattaagtgattatttgagac |
40511954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 544 - 592
Target Start/End: Complemental strand, 22122314 - 22122266
Alignment:
| Q |
544 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggat |
592 |
Q |
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| T |
22122314 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggat |
22122266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 544 - 592
Target Start/End: Original strand, 40512159 - 40512207
Alignment:
| Q |
544 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggat |
592 |
Q |
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| T |
40512159 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggat |
40512207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 445
Target Start/End: Complemental strand, 22122448 - 22122413
Alignment:
| Q |
410 |
caggtggatttgataccgcgcatgctgcggcaaggt |
445 |
Q |
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| T |
22122448 |
caggtggatttgataccgcgcatgctgcggcaaggt |
22122413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 445
Target Start/End: Original strand, 40512025 - 40512060
Alignment:
| Q |
410 |
caggtggatttgataccgcgcatgctgcggcaaggt |
445 |
Q |
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| T |
40512025 |
caggtggatttgataccgcgcatgctgcggcaaggt |
40512060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 6063795 - 6063891
Alignment:
| Q |
77 |
tgaagaagagtcgtcgtggaccgaggtcacgaagctcgcagtatcgtggtgttactttctaccggagaactggacgttgggaatctcatatttggtt |
173 |
Q |
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| T |
6063795 |
tgaagaagagtcgtagaggaccaaggtccagaagttctcagtatagaggtgttactttttacagaagaacaggtcgatgggagtctcatatatggtt |
6063891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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