View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_111 (Length: 289)
Name: NF2519_low_111
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_111 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 23914950 - 23914673
Alignment:
| Q |
1 |
tcatacacaagtaacaattcacctttctcaacacaccaacctaaaagttgaaccaaattcttgtgccttaaaccagctataatcgataactccgataaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23914950 |
tcatacacaagtaacaattcacctttctcaacacaccaacctaaaagttgaaccaaattcttgtgccttaaaccagctataatcgataactcggataaaa |
23914851 |
T |
|
| Q |
101 |
actcggttttcccttcatgtgaatgtcttgatcttttaacagcagcaactgtaccagaagaaacaagcaaagccttataaactgttccaaatgaaccatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23914850 |
actcggtttttccttcatgtgaatgtcttgatcttttaacagcagcaactgtaccagaagaaacaagcaaagccttataaactgttccaaatgaaccatt |
23914751 |
T |
|
| Q |
201 |
cccaattattcttgaaccatgaaaccctttagtggcaaacttcaattccttataaccaaactctttaggacaccctat |
278 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23914750 |
cccaattattcttgaaccatgaaaccctttagtagcaaacttcaattccttataaccaaactctttaggacaacctat |
23914673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 1225130 - 1224983
Alignment:
| Q |
1 |
tcatacacaagtaacaattcacctttctcaacacaccaacctaaaagttgaaccaaattcttgtgccttaaaccagctataatcgataactccgataaaa |
100 |
Q |
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||||| ||||| | ||| ||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||| || || || || || | || |
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| T |
1225130 |
tcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatgttcaattcagagagaa |
1225031 |
T |
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| Q |
101 |
actcggttttcccttcatgtgaatgtcttgatcttttaacagcagcaa |
148 |
Q |
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| T |
1225030 |
actcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaa |
1224983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 41963656 - 41963478
Alignment:
| Q |
19 |
tcacctttctcaacacaccaacctaaaagttgaaccaaattcttgtgccttaaaccagctataatcgataactccgataaaaactcggttttcccttcat |
118 |
Q |
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||||||||||||||| ||||||| || | ||| ||||||||||||||||||||||||| || || || || || | ||||||||| || ||||||| |
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| T |
41963656 |
tcacctttctcaacagaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatgttcaattcagagagaaactcggtctttccttcat |
41963557 |
T |
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| Q |
119 |
gtgaatgtcttgatcttttaacagcagcaactgtaccagaagaaacaagcaaagccttataaactgttccaaatgaacc |
197 |
Q |
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| T |
41963556 |
gtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttatacacagttccaaatgaacc |
41963478 |
T |
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