View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_116 (Length: 279)
Name: NF2519_low_116
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_116 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 31228320 - 31228567
Alignment:
| Q |
14 |
gatatgaacatttataaagtatttagacttttctacaaggagaatccatgctgatagaatgcatatctgcatcagacataaattctgaagttgcatttat |
113 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31228320 |
gatataaacatttataaagtatttagactt--ctacaaggagaatccatgctgatagaatgcatatctgcatcagacataaattctgaagttgcatttat |
31228417 |
T |
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| Q |
114 |
taagatgctctcttcttgagtctcaggtgtatcagctttttcactttgctgataatattgttgaatcatttccaacttcttgccttcaaaaacttggctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31228418 |
taagatgctctcttcttgagtctcaggtgtatcaactttttcactttgctgataatattgttgaatcatttccaacttcttgccttcaaaaacttggctt |
31228517 |
T |
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| Q |
214 |
gtatcttgcataacttcttcaacaacagattttccttcaagcatgcttac |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31228518 |
gtatcttgcataacttcttcaacaacagattttccttcaagcatgcttac |
31228567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 31214229 - 31214374
Alignment:
| Q |
45 |
tctacaaggagaatccatgctgatagaatgcatatctgcatcagacataaattctgaagttgcatttattaagatgctctcttcttgagtctcaggtgta |
144 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| || |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
31214229 |
tctataaggagaatccatgctgatagaacgcatatctgtatgagacataaattctgcagtttcacttattaagatgctctcttcttgagtctcaggtgta |
31214328 |
T |
|
| Q |
145 |
tcagctttttcactttgctgataatattgttgaatcatttccaact |
190 |
Q |
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| T |
31214329 |
taaactttttcactttgttcacaatactgttgaataatttccaact |
31214374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 31176261 - 31176407
Alignment:
| Q |
44 |
ttctacaaggagaatccatgctgatagaatgcatatctgcatcagacataaattctgaagttgcatttattaagatgctctcttcttgagtctcaggtgt |
143 |
Q |
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||||| |||||||||| ||| ||| |||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31176261 |
ttctataaggagaatctatgttgaaagaatgcatatctgtatgagacgtaaattctgaagttgcatttgttaagatgctctcttcttgagtctcaggtgt |
31176360 |
T |
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| Q |
144 |
atcagctttttcactttgctgataatattgttgaatcatttccaact |
190 |
Q |
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|| | ||||||||||||| | | |||| |||||||| |||||||||| |
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| T |
31176361 |
ataaactttttcactttgttcacaatactgttgaataatttccaact |
31176407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 31187557 - 31187702
Alignment:
| Q |
45 |
tctacaaggagaatccatgctgatagaatgcatatctgcatcagacataaattctgaagttgcatttattaagatgctctcttcttgagtctcaggtgta |
144 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| || |||||||||||||| |||| || |||||||||||||||||||||||||||| |||||| |
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| T |
31187557 |
tctataaggagaatccatgctgatagaacgcatatctgtatgagacataaattctgcagtttcacttattaagatgctctcttcttgagtctctggtgta |
31187656 |
T |
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| Q |
145 |
tcagctttttcactttgctgataatattgttgaatcatttccaact |
190 |
Q |
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| | ||||||||||||| | | |||| |||||||| |||||||||| |
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| T |
31187657 |
taaactttttcactttgttcacaatactgttgaataatttccaact |
31187702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 31195617 - 31195762
Alignment:
| Q |
45 |
tctacaaggagaatccatgctgatagaatgcatatctgcatcagacataaattctgaagttgcatttattaagatgctctcttcttgagtctcaggtgta |
144 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||| || |||||||||||||| |||| || |||||||||||||||||||||||||||| |||||| |
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| T |
31195617 |
tctataaggagaatccatgctgatagaacgcatatctgtatgagacataaattctgcagtttcacttattaagatgctctcttcttgagtctctggtgta |
31195716 |
T |
|
| Q |
145 |
tcagctttttcactttgctgataatattgttgaatcatttccaact |
190 |
Q |
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| | ||||||||||||| | | |||| |||||||| |||||||||| |
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| T |
31195717 |
taaactttttcactttgttcacaatactgttgaataatttccaact |
31195762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 31176410 - 31176510
Alignment:
| Q |
163 |
tgataatattgttgaatcatttccaacttcttgccttcaaaaacttggcttgtatcttgcataacttcttcaacaacagattttccttcaagcatgctta |
262 |
Q |
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|||| ||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
31176410 |
tgatgatactgttgaataatttccaacttattgccttcaaaaacttggcttgtgtcttgtataacttcttcaacatcagattgtccttcaagcatgctta |
31176509 |
T |
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| Q |
263 |
c |
263 |
Q |
| |
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| T |
31176510 |
c |
31176510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 31187705 - 31187805
Alignment:
| Q |
163 |
tgataatattgttgaatcatttccaacttcttgccttcaaaaacttggcttgtatcttgcataacttcttcaacaacagattttccttcaagcatgctta |
262 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
31187705 |
tgatgatactgttgaataatttccaacttattgccttcaaaaacttggtttgtgtcttgtataacttcttcaacatcagattgtccttcaagcatgctta |
31187804 |
T |
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| Q |
263 |
c |
263 |
Q |
| |
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| |
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| T |
31187805 |
c |
31187805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 31195765 - 31195865
Alignment:
| Q |
163 |
tgataatattgttgaatcatttccaacttcttgccttcaaaaacttggcttgtatcttgcataacttcttcaacaacagattttccttcaagcatgctta |
262 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||| |
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| T |
31195765 |
tgatgatactgttgaataatttccaacttattgccttcaaaaacttggcttgtgtcttgtttaacttcttcaacatcagattgtccttcaagcatgctta |
31195864 |
T |
|
| Q |
263 |
c |
263 |
Q |
| |
|
| |
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|
| T |
31195865 |
c |
31195865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 31214377 - 31214477
Alignment:
| Q |
163 |
tgataatattgttgaatcatttccaacttcttgccttcaaaaacttggcttgtatcttgcataacttcttcaacaacagattttccttcaagcatgctta |
262 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||| |
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| T |
31214377 |
tgatgatactgttgaataatttccaacttattgccttcaaaaacttggcttgtgtcttgtttaacttcttcaacatcagattgtccttcaagcatgctta |
31214476 |
T |
|
| Q |
263 |
c |
263 |
Q |
| |
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| |
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|
| T |
31214477 |
c |
31214477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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