View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_118 (Length: 277)
Name: NF2519_low_118
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_118 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 32456848 - 32456595
Alignment:
| Q |
10 |
aagaaaattatgaagacaatgaacattttcatcttcccacttctcactattttgttcatggcaatttctcacatgggtcatgctcagaattttgatattt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32456848 |
aagaaaattatgaagacaatgaacattttcatcttcccactactcactattttgttcatggcaatttctcacatgggtcatgctcagaattttgatattt |
32456749 |
T |
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| Q |
110 |
ctcctgcacctactcctactagtgatgctcagattctggatcaaggaattgcttattctcttatgttggtggcgctggttattacatacatgtttcattg |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32456748 |
ctccagcacctactcctactagtgatgctcagattctggatcaaggaattgcttattctcttatgttggtagcgctggttattacatacatgtttcattg |
32456649 |
T |
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| Q |
210 |
atattttttctattaa---tagtagaaggaaatttcagatatttttgtatatgt |
260 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32456648 |
atattttttctattaattttagtagaaggaaatttcagatatttttgtatatgt |
32456595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 32461343 - 32461142
Alignment:
| Q |
10 |
aagaaaattatgaagacaatgaacattttcatcttcccacttctcactattttgttcatggcaatttctcacatgggtcatgctcagaattttgatattt |
109 |
Q |
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||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32461343 |
aagaaaattatgaggacaatgaatattttcatcttccctcttctcactattttgttcatggcaatttctcacatgggtcatgctcaaaattttgatattt |
32461244 |
T |
|
| Q |
110 |
ctcctgcacctactcctactagtgatgctcagattctggatcaaggaattgcttattctcttatgttggtggcgctggttattacatacatgtttcattg |
209 |
Q |
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|||| |||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||| |||| |||||||| |||||||||||| ||||||| |
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| T |
32461243 |
ctccagcacctactcctacaagtgatgctcagagtcttgatcaagtaattgcttattctcttatggtggtcgcgctggtgattacatacatgcttcattg |
32461144 |
T |
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| Q |
210 |
at |
211 |
Q |
| |
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|| |
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| T |
32461143 |
at |
32461142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 32440232 - 32440025
Alignment:
| Q |
11 |
agaaaattatgaagacaatgaacattttcatcttcccacttctcactattttgttcatggcaatttctcacatgggtcatgctcagaattttgatatttc |
110 |
Q |
| |
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||||||| |||||||||||||| || |||||||||||| |||| | |||||||||||||| ||||||||| |||||||||||| | | |||||||||||| |
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| T |
32440232 |
agaaaataatgaagacaatgaatatattcatcttcccaattctaagtattttgttcatgggaatttctcatatgggtcatgctaaaatttttgatatttc |
32440133 |
T |
|
| Q |
111 |
tcctgcacctactcctactagtgatgctcagattctggatcaaggaattgcttattctcttatgttggtggcgctggttattacatacatgtttcattga |
210 |
Q |
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||| |||||||||||||| ||| |||||||||||||||||||| |||||||| || ||||||||| ||||||||||| |||||||||||| | |||||| |
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| T |
32440132 |
tccagcacctactcctaccggtggtgctcagattctggatcaagtaattgcttgttttcttatgttagtggcgctggtcattacatacatgctccattga |
32440033 |
T |
|
| Q |
211 |
tatttttt |
218 |
Q |
| |
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| |||||| |
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|
| T |
32440032 |
tttttttt |
32440025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 211
Target Start/End: Complemental strand, 32463998 - 32463824
Alignment:
| Q |
37 |
ttcatcttcccacttctcactattttgttcatggcaatttctcacatgggtcatgctcagaattttgatatttctcctgcacctactcctactagtgatg |
136 |
Q |
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|||| |||||||||||| | | | || ||||||||||| ||||| ||||||| ||||| ||||||||| ||||| |||||| ||||||| ||||||| |
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| T |
32463998 |
ttcaccttcccacttcttagtttgtttttcatggcaatctctcatttgggtcaagctcaaggttttgatatgtctccagcaccttctcctacaagtgatg |
32463899 |
T |
|
| Q |
137 |
ctcagattctggatcaaggaattgcttattctcttatgttggtggcgctggttattacatacatgtttcattgat |
211 |
Q |
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|||||||||| ||||||||||||||||| | |||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
32463898 |
ctcagattcttgatcaaggaattgcttactttcttatgttggtggcgttggtgattacatacatgttccattgat |
32463824 |
T |
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