View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_120 (Length: 274)
Name: NF2519_low_120
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_120 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 4559906 - 4560153
Alignment:
| Q |
13 |
gagatgaaagttaactataagagccgcgaagatctactc----cctcctaaagtatctatacaatgtttgccacagtagctagcaaaaggatgaaagtaa |
108 |
Q |
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| T |
4559906 |
gagatgaaagttaactataagagccgcgaagaactactcactccctcctaaagtatctatacaatgtttgccacagtagctagcaaaaggatgaaagtaa |
4560005 |
T |
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| Q |
109 |
ctggtattgtattgcttgtgatactgctgttcatctcatgattagcagcaaataatcaattgtaaacatcattgtgatttcaagaaatgatttttcataa |
208 |
Q |
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| T |
4560006 |
ctgatattgtattgcttgtgatactgctgttcatctcatgattagcagcaaataatcaattgtaaacatcattgtgatttcaagaaatgatttttcataa |
4560105 |
T |
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| Q |
209 |
ctattatacaggaacatcttcgagcaatctatttcatttatgacatat |
256 |
Q |
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| T |
4560106 |
ctattatacaggaacatcttcgatcaatctatttcatttatgacatat |
4560153 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 4566343 - 4566420
Alignment:
| Q |
14 |
agatgaaagttaactataagagccgcgaagatctactccctcctaaag----tatctatacaatgtttgccacagtag |
87 |
Q |
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| T |
4566343 |
agattaaagttaactataagagccgcaaagaactattccctcctaaagtatctatctatacaatgtttgccagagtag |
4566420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 31905122 - 31904922
Alignment:
| Q |
14 |
agatgaaagttaactataagagccgcgaagatctactccctcctaaagtatctatacaatgtttgccacagt--agct----agcaaaaggatgaaagta |
107 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||| |
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| T |
31905122 |
agatgaaagttaactataagagccgcaaagaactactccctcctaaagtatctatacaaagtttgccacaagcaaactcctgagcaaaaggatgaaagta |
31905023 |
T |
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| Q |
108 |
actggtattgtattgcttgtgatactgctgttcatctcatgattagcagcaaataatcaattgtaaacatcattgtgatttcaagaaatgatttttcata |
207 |
Q |
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||||||||||||||| |||||||| || |||| ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31905022 |
actggtattgtattgtttgtgatattgttgttgatctcatgattagca---agtaatcaattgta-----cattgtgatttcaagaaatgatttttcata |
31904931 |
T |
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| Q |
208 |
actattata |
216 |
Q |
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|| |||||| |
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| T |
31904930 |
accattata |
31904922 |
T |
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