View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_124 (Length: 266)
Name: NF2519_low_124
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_124 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29121270 - 29121526
Alignment:
| Q |
1 |
tggaagcaggacatgttgaaaactttaaagtaaaaaagtactataattgaaatggcattgtaccatttttgatcgtatattctttccttgaatttgaggt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29121270 |
tggaagcatgacatgttgaaaactttaaaatgaaaaagtactataactgaaatggcattgtaccatttttggtcgtatattctttccttgaatttgaggt |
29121369 |
T |
|
| Q |
101 |
aatcggtggatgttataggttcaactgaaagattctcagagctcacttttacatattcccaaactccagggtctggccttactgcaaaggcaacatatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121370 |
aatcggtggatgttataggttcaactgaaagattctcagagctcacttttacatattcccaaactccagggtctggccttactgcaaaggcaacatatgg |
29121469 |
T |
|
| Q |
201 |
tggatcaacaatagcttcctgcaagcattaaaatccatattaattaataagcctatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29121470 |
tggatcaacaatagcttcctgcaagcattaaaatccatattaattaataagcctatg |
29121526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 32773980 - 32773817
Alignment:
| Q |
62 |
accatttttgatcgtatattctttccttgaatttgaggtaatcggtggatgttataggttcaactgaaagattctcagagctcacttttacatattccca |
161 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||||| |||| || ||||| ||||| || || | |||||| | || ||| |||||||| |
|
|
| T |
32773980 |
accatttttggtcatatactctttccttgaatttgaggtaatctgtgggggtgataggctcaacagagaggtcctcagaattgacacgtacgtattccca |
32773881 |
T |
|
| Q |
162 |
aactccagggtctggccttactgcaaaggcaacatatggtggatcaacaatagcttcctgcaag |
225 |
Q |
| |
|
|||||| || | ||||| | ||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
32773880 |
aactcctggattaggcctaattgcaaaggctacatatggtggatcaacaacagcttcctgcaag |
32773817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 6732050 - 6732199
Alignment:
| Q |
61 |
taccatttttgatcgtatattctttccttgaatttgaggtaatcggtggatgttataggttcaactgaaagattctcagagctcacttttacatattccc |
160 |
Q |
| |
|
|||||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||||||| || ||| ||||||| ||||||| |||| | |||| |
|
|
| T |
6732050 |
taccattttttatcatatattctttcttttaatttgacgtaatcggtggatgttataggttcaagtggaaggttctcagcgctcactcttac--actccc |
6732147 |
T |
|
| Q |
161 |
aaactccagggtctggc---cttactgcaaaggcaacatatggtggatcaac |
209 |
Q |
| |
|
||||| ||| ||| || |||||| |||||||||||| ||||||||||| |
|
|
| T |
6732148 |
aaacttcagtgtcctgctggcttacttgaaaggcaacatacggtggatcaac |
6732199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 6654926 - 6654981
Alignment:
| Q |
152 |
catattcccaaactccagggtctggccttactgcaaaggcaacatatggtggatca |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6654926 |
catattcccaaactccaggatctggccttcctgcaaaggcaacatatggtggatca |
6654981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 10529 - 10584
Alignment:
| Q |
152 |
catattcccaaactccagggtctggccttactgcaaaggcaacatatggtggatca |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10529 |
catattcccaaactccaggatctggccttcctgcaaaggcaacatatggtggatca |
10584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University