View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_130 (Length: 262)
Name: NF2519_low_130
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_130 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 9380852 - 9381100
Alignment:
| Q |
14 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
113 |
Q |
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| T |
9380852 |
atgaatgcaaaaagttaccatggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
9380951 |
T |
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| Q |
114 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
213 |
Q |
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| T |
9380952 |
aaaagccttagaattcttaaaagatgttccatacttagcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
9381051 |
T |
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| Q |
214 |
gccacagccacacttcttgttccacttatgtatcacatagccataaata |
262 |
Q |
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| T |
9381052 |
gccacagccacacttcttgttccacttttgtatcacatagccataaata |
9381100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 55738865 - 55739105
Alignment:
| Q |
14 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
113 |
Q |
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|||||||||| || |||| ||||||||||||||| | || |||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| | || |
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| T |
55738865 |
atgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttc |
55738964 |
T |
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| Q |
114 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
213 |
Q |
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| T |
55738965 |
taaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataagtagtattattactgaattcatcacttctaatgat |
55739064 |
T |
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| Q |
214 |
gccacagccacacttcttgttccacttatgtatcacatagc |
254 |
Q |
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| T |
55739065 |
gccactgctacacttattattccacttctatatcatatagc |
55739105 |
T |
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