View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_131 (Length: 262)
Name: NF2519_low_131
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_131 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 41433680 - 41433447
Alignment:
| Q |
20 |
gatgacagttcttccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttattcagaggtatcaacatggc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41433680 |
gatgacagttcttccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggc |
41433581 |
T |
|
| Q |
120 |
aaaatggtacagattgttactcatggcttggtgtttgttacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatggccttcaag |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41433580 |
aaaatggtacagattgttgctcatggcttggtgtttgttacctgtgacacagtttctggtcacgtaattggcttagacctcagctgcaatggccttcaag |
41433481 |
T |
|
| Q |
220 |
gtatgattcatcccaacagtacactttttcatct |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41433480 |
gtatgattcatcccaacagtacactttttcatct |
41433447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 41446400 - 41446171
Alignment:
| Q |
20 |
gatgacagttcttccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttattcagaggtatcaacatggc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41446400 |
gatgacagttcttccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggc |
41446301 |
T |
|
| Q |
120 |
aaaatggtacagattgttactcatggcttggtgtttgttacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatggccttcaag |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41446300 |
aaaatggtacagattgttgctcatggcttggtgtc----acctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgaccttcaag |
41446205 |
T |
|
| Q |
220 |
gtatgattcatcccaacagtacactttttcatct |
253 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
41446204 |
gtattattcatcccaacagtacactttttcatct |
41446171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University