View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_135 (Length: 258)
Name: NF2519_low_135
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_135 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 11471092 - 11470859
Alignment:
| Q |
3 |
agaaaggataacgatgaaacaacnnnnnnnntgtaaaggaagattcttgttgataaatttcgacaagattacataatattaatgttggaatattacaaag |
102 |
Q |
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| T |
11471092 |
agaaaggataacgatgaaacagcaaaaaaaatgtaaaggaagattcttgttgataaatttcgacaagattacataatgtt-----tggaatattacaaag |
11470998 |
T |
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| Q |
103 |
ataggtaaggttacattcaaatgaattgttttgtcgaaagataaaagtacatgatatctccctccaagaggccaagccatggggaaaagttggatatgaa |
202 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11470997 |
atagataaggttacattcaaatgaattgttttgtcgaaagacaaaagtacatgatatctccctccaagaggccaagccatggggaaaagttggatatgaa |
11470898 |
T |
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| Q |
203 |
gcacgaaattacaggaaacaaaaagagcacaaagtgtat |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
11470897 |
gcacgaaattacaggaaacaaaaagagcacaaagtgtat |
11470859 |
T |
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