View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_136 (Length: 258)
Name: NF2519_low_136
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_136 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 40049810 - 40049600
Alignment:
| Q |
10 |
cataggatgactaggttccaccattcttctatcaaaatatgaaccatcaaatggatatggatttctttccacaatattataatcattgtcaaatataaca |
109 |
Q |
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| T |
40049810 |
cataggatgactaggttccaccattcttctatcaaaatatggaccatcaaatggatatggatttctttccacaatattataatcctcgtcataaataaca |
40049711 |
T |
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| Q |
110 |
tttggttga---tgatatggatattgtggttgtgggtaatagtacctgtgattaggctgcaccatcaactatatcaaacaattaatcattcgtgatataa |
206 |
Q |
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| T |
40049710 |
tttggttgatgatgatatggatactgtggttgtgggtaataatacccgtgattaggctgga-catcaagtataacaaacaattaataattggtgatataa |
40049612 |
T |
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| Q |
207 |
aaaatcaaacaa |
218 |
Q |
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|||||||||||| |
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| T |
40049611 |
aaaatcaaacaa |
40049600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 33251231 - 33251286
Alignment:
| Q |
137 |
tgtgggtaatagtacctgtgattaggctgcaccatcaactatatcaaacaattaat |
192 |
Q |
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| T |
33251231 |
tgtgggtaatagtacctgtgaccaggctgcaccatcaagtatataaaaaaattaat |
33251286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 1617072 - 1617198
Alignment:
| Q |
116 |
tgatgatatggatattgtggttgtgggtaatagtacctgtgattaggctgcaccatcaactatatcaaacaattaatcattcgtgatataaaaaatcaaa |
215 |
Q |
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| T |
1617072 |
tgatgatatggatattgtggttgtgggtaatagtacctgtgattaggctgcaccatcaagtatatcaaacaattaatcattcgtgatataaaaaatcaaa |
1617171 |
T |
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| Q |
216 |
caattgatagataaacaacctaataaa |
242 |
Q |
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| T |
1617172 |
caatttatagataaacaacctaataaa |
1617198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 1617002 - 1617061
Alignment:
| Q |
10 |
cataggatgactaggttccaccattcttctatcaaaatatgaaccatcaaatggatatgg |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1617002 |
cataggatgactaggttccaccattcttctatcaaaatatgaaccatcaaatggatatgg |
1617061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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