View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_14 (Length: 538)
Name: NF2519_low_14
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 5421661 - 5421151
Alignment:
| Q |
18 |
aaatgcagggtgtttgtgttgaaattatgttctgttattaattactgctattatggatactactattggcaggtaaacgagctgaatacattgtcgagga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5421661 |
aaatgcagggtgtttgtgttgaaattatgttctgttattaattactgctattatggatactactattggcaggtaaacgagctgaatacattgtcgagga |
5421562 |
T |
|
| Q |
118 |
agatgataggtaccaaattgggattctaaacatgaatgcaaggaacataatcttgactttgcatatcaatgtttctgcaaagatatatgatactacgaaa |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5421561 |
agatgataggtaccaaattgggattctaaacatgaatgcaaggaacataatcttgactttgcatatcaatgtttctgcaaagatatatgatactacgaaa |
5421462 |
T |
|
| Q |
218 |
gccacgaataagtgctctactcggaatggatcgtgcaaactcgaccnnnnnnnccctatcacatattatttagttctaacagcgccaaaaaatgtaagac |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5421461 |
gccacgaataagtgctctactcggaatggatcgtgcaaactcgacctttttttccctatcacatattatttagttctaacagcgccaaaaaatgtaagac |
5421362 |
T |
|
| Q |
318 |
taactaattattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcctatgaattgactacagggaaatgatgatga |
417 |
Q |
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|
||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5421361 |
taactaattattgctataattcatatcatattattgtatatttttttcaatgtatattcattatggttcctatgtattgactacagggaaatgatgatga |
5421262 |
T |
|
| Q |
418 |
tgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatccttctaggtaccttaaattaaactattattaatttatgaaaactt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5421261 |
tgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatccttttaggtaccttaaattaaactattattaatttatgaaaactt |
5421162 |
T |
|
| Q |
518 |
tgtttcctatg |
528 |
Q |
| |
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||||||||||| |
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| T |
5421161 |
tgtttcctatg |
5421151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 293 - 472
Target Start/End: Complemental strand, 2683242 - 2683063
Alignment:
| Q |
293 |
ctaacagcgccaaaaaatgtaagactaactaattattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcctatga |
392 |
Q |
| |
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|||||| | ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
2683242 |
ctaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattcattatggtgcctatga |
2683143 |
T |
|
| Q |
393 |
attgactacagggaaatgatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatc |
472 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2683142 |
attgattacagggaaataatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatc |
2683063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 528
Target Start/End: Complemental strand, 2683061 - 2683029
Alignment:
| Q |
496 |
tattattaatttatgaaaactttgtttcctatg |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
2683061 |
tattattattttatgaaaactttgtttcctatg |
2683029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 293 - 472
Target Start/End: Original strand, 5480069 - 5480248
Alignment:
| Q |
293 |
ctaacagcgccaaaaaatgtaagactaactaattattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcctatga |
392 |
Q |
| |
|
|||||| | ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
5480069 |
ctaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattcattatggtgcctatga |
5480168 |
T |
|
| Q |
393 |
attgactacagggaaatgatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatc |
472 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5480169 |
attgattacagggaaataatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatc |
5480248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 528
Target Start/End: Original strand, 5480250 - 5480282
Alignment:
| Q |
496 |
tattattaatttatgaaaactttgtttcctatg |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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| T |
5480250 |
tattattattttatgaaaactttgtttcctatg |
5480282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 293 - 472
Target Start/End: Complemental strand, 45006668 - 45006489
Alignment:
| Q |
293 |
ctaacagcgccaaaaaatgtaagactaactaattattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcctatga |
392 |
Q |
| |
|
|||||| | ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
45006668 |
ctaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattcattatggtgcctatga |
45006569 |
T |
|
| Q |
393 |
attgactacagggaaatgatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatc |
472 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45006568 |
attgattacagggaaataatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatc |
45006489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 528
Target Start/End: Complemental strand, 45006487 - 45006455
Alignment:
| Q |
496 |
tattattaatttatgaaaactttgtttcctatg |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
45006487 |
tattattattttatgaaaactttgtttcctatg |
45006455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 293 - 474
Target Start/End: Original strand, 34217507 - 34217692
Alignment:
| Q |
293 |
ctaacagcgccaaaaaatgtaagactaactaa----ttattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcct |
388 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
34217507 |
ctaacagcaccaaaaaatgtaagactaattaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattcattatggttccc |
34217606 |
T |
|
| Q |
389 |
atgaattgactacagggaaatgatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatcct |
474 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34217607 |
atgaattgattacagggaaataatgatgatgatgcatggttttttgaaatttcttttatggctcgtgttttttcctacataatcct |
34217692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 528
Target Start/End: Original strand, 34217704 - 34217736
Alignment:
| Q |
496 |
tattattaatttatgaaaactttgtttcctatg |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
34217704 |
tattattattttatgaaaactttgtttcctatg |
34217736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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