View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_143 (Length: 250)
Name: NF2519_low_143
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_143 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 6680774 - 6681014
Alignment:
| Q |
10 |
aagaaaatcaagctcccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgctcaattt |
109 |
Q |
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| T |
6680774 |
aagaaaatcaatctcccactccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgctcaattt |
6680873 |
T |
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| Q |
110 |
atttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttataatgaaattgttaggctgcgtcc |
209 |
Q |
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| T |
6680874 |
atttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttataatgaaattgttaggctgcgtcc |
6680973 |
T |
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| Q |
210 |
attccattttcacccttttgatgaaagaactaggagagcct |
250 |
Q |
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| T |
6680974 |
attccattttcacccttttgatgaaaggactaggagagcct |
6681014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 6675491 - 6675666
Alignment:
| Q |
25 |
ccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgctcaatttatttattttcatcac |
124 |
Q |
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| T |
6675491 |
ccaccccttaaacacaatggcactatttttggtaattgcattttgtcatcccctccaactacaaatgatgaaacatgctccatttatttattttcatcac |
6675590 |
T |
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| Q |
125 |
atagcctttgaatgttctactaccaacttggagataagcaatggac---taaagtgtgcttttataatgaaattgt |
197 |
Q |
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| T |
6675591 |
atagcctttcaatgttctactaccaacttggagataagcaatggacttataaagtgtgcctttataatgaaattgt |
6675666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 6664740 - 6664564
Alignment:
| Q |
10 |
aagaaaatcaagctcccaccccttaaacacaatggtactaagtttgggaattgcattttgacatcccctccagctacaaatgatgaaacatgctcaattt |
109 |
Q |
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|||||||||| ||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||| ||||||||||| ||| || |||| |
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| T |
6664740 |
aagaaaatcatgcttccaccccttaaacacaatggcactccttttggtaattgcattttgacatcccctccaactagaaatgatgaaatatgttccattt |
6664641 |
T |
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| Q |
110 |
atttattttcatcacatagcctttgaatgttctactaccaacttggagataagcaatggactaaagtgtgcttttat |
186 |
Q |
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| T |
6664640 |
atttattttgctcacgttgcccttcaatattctactaccaacttggagataagcaatgtactaaagtgtgcttttat |
6664564 |
T |
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