View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_145 (Length: 250)
Name: NF2519_low_145
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_145 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 46479012 - 46478765
Alignment:
| Q |
1 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttga |
100 |
Q |
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| T |
46479012 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtttgtttgagtgtgccgtatttacccagaaaccccaaaatgaaaccagttga |
46478913 |
T |
|
| Q |
101 |
tggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttattc------ttatatgctacgaatcagtta |
194 |
Q |
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| T |
46478912 |
tggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttattcttattcttatatgctacgaatcagtta |
46478813 |
T |
|
| Q |
195 |
cagatgtgtttc--cacaaatttctgcttgaattattactcccctttg |
240 |
Q |
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| T |
46478812 |
cagatgtgtttctgcacaaatttctgcttgaattattactcccctttg |
46478765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 46494512 - 46494342
Alignment:
| Q |
1 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttga |
100 |
Q |
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| T |
46494512 |
ttggttggtatctttgcttgtttcgccctgagagagttaaagcctatgtgtgtctcagtgtgccgtatttacccagaaaccccaaagtgaaaccagttga |
46494413 |
T |
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| Q |
101 |
tggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttat |
171 |
Q |
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| T |
46494412 |
tggcatgcgagctttatttggagatgactattatatctgcagattccaggttcgaattcatatatttttat |
46494342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 46490214 - 46490063
Alignment:
| Q |
1 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttga |
100 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||| || || ||| ||||||| |||||||||||||||||||| ||| ||||||| ||||| |
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| T |
46490214 |
ttggttggtatctttgtttgtttcgccctgaaagaatcaaagcctacgtgtgtctgagtgttccgtatttacccagaaacccaaaattgaaacctgttga |
46490115 |
T |
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| Q |
101 |
tggcatgcgagctttgtttggagatgattactatatctgcagattccaggtt |
152 |
Q |
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| T |
46490114 |
tggcatgcgagctgtgtatggtgatgattattatatctgcagattccaggtt |
46490063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 46516801 - 46516644
Alignment:
| Q |
1 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttga |
100 |
Q |
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| T |
46516801 |
ttggttggtatctttgtttgtttcgtcctgagaaagtcaaggcttatgtttgcctcagtgttccattgttaccaagaaaccccaaagtaaaacctgttga |
46516702 |
T |
|
| Q |
101 |
tggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgtttt |
158 |
Q |
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| T |
46516701 |
tggcatgcaagctttgtttggtgacgattattatatctgcagattccaggtttgtttt |
46516644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46524508 - 46524456
Alignment:
| Q |
1 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgt |
53 |
Q |
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||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
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| T |
46524508 |
ttggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgt |
46524456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46532061 - 46532009
Alignment:
| Q |
1 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgt |
53 |
Q |
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||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
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| T |
46532061 |
ttggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgt |
46532009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 46520442 - 46520292
Alignment:
| Q |
1 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttaccc--agaaaccccaaagtgaaaccagtt |
98 |
Q |
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| T |
46520442 |
ttggttggtatctttgcatgtttcgccctgaaagaatcaaagcctatgtttgtcttagtgttcc--atttaaccatagaaaccccacagtgaagcctatt |
46520345 |
T |
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| Q |
99 |
gatggcatgcgagctttgtttggagatgattactatatctgcagattccaggt |
151 |
Q |
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||||| | ||| ||| | |||||| ||||| |||||||||||||| ||||| |
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| T |
46520344 |
gatggtaggcgtgctgcttatggagacgattattatatctgcagatttcaggt |
46520292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46326756 - 46326804
Alignment:
| Q |
1 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgt |
49 |
Q |
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| T |
46326756 |
ttggttggtatctttgtatgtttcgccctgaaagaatcaaagcctatgt |
46326804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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