View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_146 (Length: 250)
Name: NF2519_low_146
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_146 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 11319523 - 11319288
Alignment:
| Q |
10 |
attatactaaccatcaagagtgttctatatggtgtgaagaaaattaaattaattatattggtttattggcaagaaaggcttaattatatgctcataaaac |
109 |
Q |
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| T |
11319523 |
attatactaaccatcaagagtgttctatatggtgtgaagaaaattaaattaattatattggtt-attggcaagaaaggcttaattatatgctcataaaac |
11319425 |
T |
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| Q |
110 |
gctttaacgtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggcgt |
209 |
Q |
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| T |
11319424 |
gctttaacgtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggcgt |
11319325 |
T |
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| Q |
210 |
ttcctgtgttccttagatcatattttttctgaatttt |
246 |
Q |
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| T |
11319324 |
ttcctgtgttcctcagatcatgttttttctgaatttt |
11319288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 11477544 - 11477309
Alignment:
| Q |
10 |
attatactaaccatcaagagtgttctatatggtgtgaagaaaattaaattaattatattggtttattggcaagaaaggcttaattatatgctcataaaac |
109 |
Q |
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| T |
11477544 |
attatactaaccatcaagagtgttctatatggtgtgaagaaaattaaattaattatattggtt-attggcaagaaaggcttaattatatgctcataaaac |
11477446 |
T |
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| Q |
110 |
gctttaacgtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggcgt |
209 |
Q |
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| T |
11477445 |
gctttaacgtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggcgt |
11477346 |
T |
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| Q |
210 |
ttcctgtgttccttagatcatattttttctgaatttt |
246 |
Q |
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| T |
11477345 |
ttcctgtgttcctcagatcatgttttttctgaatttt |
11477309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 56401904 - 56401989
Alignment:
| Q |
118 |
gtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttc-atgggaaaatagaactctgat |
202 |
Q |
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| T |
56401904 |
gtttcttttataattttcatcattttgatacttcttagttgcagctgaaaaatatgctttgttcaaggggaaaagagaactttgat |
56401989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 18905260 - 18905203
Alignment:
| Q |
123 |
ttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgtt |
180 |
Q |
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||||||| || ||| ||||||||| |||||||||||||||| || | ||||||||||| |
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| T |
18905260 |
ttctataattctctccattttgatatttcttagttgcagctaaattttatgctttgtt |
18905203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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